Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DOM21_RS18405 Genome accession   NZ_CP030035
Coordinates   3695463..3696578 (+) Length   371 a.a.
NCBI ID   WP_102241969.1    Uniprot ID   A0A2K9NPH4
Organism   Bacteriovorax stolpii strain AC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3690463..3701578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM21_RS18375 (DOM21_18410) - 3691109..3691588 (+) 480 WP_102241976.1 hypothetical protein -
  DOM21_RS18380 (DOM21_18415) - 3691661..3691882 (-) 222 WP_102241975.1 hypothetical protein -
  DOM21_RS18385 (DOM21_18420) - 3692116..3692556 (+) 441 WP_142410242.1 FHA domain-containing protein -
  DOM21_RS18390 (DOM21_18425) - 3692549..3693445 (+) 897 WP_102241973.1 alpha/beta fold hydrolase -
  DOM21_RS18395 (DOM21_18430) - 3693442..3694683 (-) 1242 WP_142410243.1 TIGR04552 family protein -
  DOM21_RS18400 (DOM21_18435) - 3694729..3695232 (+) 504 WP_142410244.1 phosphatidylglycerophosphatase A -
  DOM21_RS18405 (DOM21_18440) recA 3695463..3696578 (+) 1116 WP_102241969.1 recombinase RecA Machinery gene
  DOM21_RS18410 (DOM21_18445) - 3696656..3697147 (+) 492 WP_102241968.1 regulatory protein RecX -
  DOM21_RS18415 (DOM21_18450) - 3697139..3698122 (-) 984 WP_142410245.1 hypothetical protein -
  DOM21_RS18420 (DOM21_18455) - 3698133..3698981 (-) 849 WP_102241966.1 TIGR02147 family protein -
  DOM21_RS18425 (DOM21_18460) - 3699045..3699524 (-) 480 WP_102241965.1 hypothetical protein -

Sequence

Protein


Download         Length: 371 a.a.        Molecular weight: 39799.80 Da        Isoelectric Point: 7.2944

>NTDB_id=298622 DOM21_RS18405 WP_102241969.1 3695463..3696578(+) (recA) [Bacteriovorax stolpii strain AC01]
MSLQKTSAAPSPEKLKALDLALSAIEKQFGKGAIMKLDNKTATEKLAVIPTGCLSLDLALGVGGIPQGRIIEIYGPESSG
KTTLTLHIAAECQKQGGTVAFVDAEHALDTTYAAKLGVDIPNTLISQPDSGEQALEIADMLVRSGAVNLLIVDSVAALTP
KAELEGEMGDSHMGLQARLMSQALRKLTGSISRSNCTVIFINQLRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTAAI
KDGESHIGNRTKVKIVKNKVAPPFKEAEFDIMYGQGISKVGDILDLASNNGIVEKAGAWFSYNNSKIGQGRENSKTFLEQ
NPEMLEEIKQKILVKFGLAEGFPAPQVDTTTGEILEEETEKAPKKSKKNIQ

Nucleotide


Download         Length: 1116 bp        

>NTDB_id=298622 DOM21_RS18405 WP_102241969.1 3695463..3696578(+) (recA) [Bacteriovorax stolpii strain AC01]
ATGTCACTACAGAAAACATCTGCTGCTCCATCACCAGAAAAATTAAAAGCCCTTGATCTAGCTCTATCTGCAATTGAAAA
ACAATTCGGAAAAGGCGCGATCATGAAACTAGATAACAAAACTGCAACTGAAAAATTAGCAGTCATCCCAACAGGATGTT
TAAGTCTAGACCTAGCGCTTGGAGTTGGCGGTATTCCTCAAGGTAGAATCATTGAAATCTACGGACCAGAATCTTCTGGT
AAAACAACTCTTACTCTTCACATTGCGGCTGAATGCCAAAAGCAAGGTGGAACAGTTGCTTTCGTAGATGCTGAACACGC
TCTTGATACAACGTACGCTGCAAAACTTGGCGTAGATATTCCAAACACTCTTATCTCTCAACCAGACTCTGGAGAACAAG
CTCTAGAGATTGCTGATATGCTCGTTCGCTCTGGTGCTGTTAACCTTCTTATCGTTGACTCGGTAGCTGCTCTTACTCCG
AAAGCAGAACTTGAAGGTGAAATGGGTGATTCACACATGGGTCTTCAAGCAAGACTTATGTCTCAAGCTTTAAGAAAACT
TACGGGATCAATCTCTCGCTCAAACTGTACAGTTATCTTCATCAACCAACTTCGTATGAAAATTGGTGTTATGTTCGGTA
ACCCAGAAACAACAACTGGTGGTAACGCTCTTAAATTCTACGCTTCAGTACGTCTGGACATCAGAAGAACTGCTGCGATT
AAAGATGGTGAATCTCATATCGGTAACAGAACAAAAGTTAAAATCGTTAAGAACAAAGTTGCTCCTCCATTCAAAGAAGC
TGAATTCGACATTATGTACGGACAAGGTATTTCTAAAGTTGGAGACATCCTTGATCTAGCTTCAAACAACGGTATCGTAG
AAAAAGCTGGAGCATGGTTCTCATACAACAACTCTAAGATCGGTCAAGGGAGAGAAAACTCTAAGACTTTCCTAGAGCAA
AACCCAGAAATGCTAGAAGAAATCAAACAAAAGATTCTAGTGAAATTTGGTCTAGCAGAAGGTTTCCCGGCTCCACAAGT
TGACACAACAACTGGTGAGATCCTTGAAGAAGAAACTGAAAAAGCTCCAAAGAAATCTAAAAAGAACATTCAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K9NPH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

64.972

95.418

0.62
  recA Neisseria gonorrhoeae MS11

63.689

93.531

0.596
  recA Neisseria gonorrhoeae MS11

63.689

93.531

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.689

93.531

0.596
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.373

90.296

0.59
  recA Acinetobacter baylyi ADP1

68.339

85.984

0.588
  recA Acinetobacter baumannii D1279779

68.339

85.984

0.588
  recA Glaesserella parasuis strain SC1401

67.391

86.792

0.585
  recA Helicobacter pylori strain NCTC11637

63.422

91.375

0.58
  recA Helicobacter pylori 26695

63.127

91.375

0.577
  recA Pseudomonas stutzeri DSM 10701

65.944

87.062

0.574
  recA Streptococcus mitis SK321

58.242

98.113

0.571
  recA Streptococcus mitis NCTC 12261

58.242

98.113

0.571
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.724

87.871

0.569
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.831

85.984

0.566
  recA Vibrio cholerae strain A1552

65.831

85.984

0.566
  recA Streptococcus pneumoniae Rx1

59.544

94.609

0.563
  recA Streptococcus pneumoniae D39

59.544

94.609

0.563
  recA Streptococcus pneumoniae R6

59.544

94.609

0.563
  recA Streptococcus pneumoniae TIGR4

59.544

94.609

0.563
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

87.871

0.558
  recA Streptococcus pyogenes NZ131

62.614

88.679

0.555
  recA Streptococcus mutans UA159

61.446

89.488

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

58.358

91.914

0.536
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.133

89.488

0.52
  recA Lactococcus lactis subsp. cremoris KW2

58.182

88.949

0.518

Multiple sequence alignment