Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DOM24_RS05740 Genome accession   NZ_CP030031
Coordinates   1239717..1240763 (-) Length   348 a.a.
NCBI ID   WP_005025682.1    Uniprot ID   A0A062BY64
Organism   Acinetobacter radioresistens strain LH6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234717..1245763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOM24_RS05705 (DOM24_05705) - 1234981..1235478 (+) 498 WP_111280981.1 OmpH family outer membrane protein -
  DOM24_RS05710 (DOM24_05710) lpxD 1235482..1236552 (+) 1071 WP_111280983.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  DOM24_RS05715 (DOM24_05715) fabZ 1236559..1237035 (+) 477 WP_005405310.1 3-hydroxyacyl-ACP dehydratase FabZ -
  DOM24_RS05720 (DOM24_05720) lpxA 1237043..1237831 (+) 789 WP_111280985.1 acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase -
  DOM24_RS05725 (DOM24_05725) - 1237912..1238736 (-) 825 WP_228156649.1 YbgF trimerization domain-containing protein -
  DOM24_RS05735 (DOM24_05735) - 1239178..1239663 (-) 486 WP_005405657.1 regulatory protein RecX -
  DOM24_RS05740 (DOM24_05740) recA 1239717..1240763 (-) 1047 WP_005025682.1 recombinase RecA Machinery gene
  DOM24_RS05745 (DOM24_05745) - 1240912..1241352 (-) 441 WP_034679911.1 RNA-binding S4 domain-containing protein -
  DOM24_RS05750 (DOM24_05750) - 1241336..1242022 (-) 687 WP_111280989.1 HAD-IA family hydrolase -
  DOM24_RS14625 - 1242404..1242550 (+) 147 WP_005405606.1 hypothetical protein -
  DOM24_RS05755 (DOM24_05755) - 1242782..1243630 (+) 849 WP_005405509.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DOM24_RS05760 (DOM24_05760) - 1243693..1244439 (+) 747 WP_005014586.1 phosphoglycerate mutase family protein -
  DOM24_RS05765 (DOM24_05765) rpsT 1244665..1244934 (-) 270 WP_005014584.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37747.21 Da        Isoelectric Point: 4.9415

>NTDB_id=298574 DOM24_RS05740 WP_005025682.1 1239717..1240763(-) (recA) [Acinetobacter radioresistens strain LH6]
MDENKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVEAVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDLIVVDSVAALTPRAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIIGSE
TKVKVVKNKMAPPFKEALFQILYGKGVNHLGELIDLAVQQEIIQKAGAWYSYQGNKIGQGKNNVIRHLEENPELAVEVER
LIREQLLTTNNAPVAEDEAEEVPDFLES

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=298574 DOM24_RS05740 WP_005025682.1 1239717..1240763(-) (recA) [Acinetobacter radioresistens strain LH6]
ATGGATGAGAACAAAAGCAAAGCGCTCAATGCCGCGTTAAGCCAAATTGAGAAACAGTTTGGTAAAAATACGGTAATGCG
CTTGGGTGATAATACCGTGCAGGCAGTAGAAGCTGTATCAACCGGTTCTTTAACATTAGATATTGCGCTGGGTATTGGCG
GTTTGCCTAAGGGCCGTATTGTTGAAATTTACGGTCCTGAGTCCTCAGGTAAAACCACTATGACATTGCAGGCAATTGCG
CAGTGTCAGAAGGCTGGTGGTACTTGTGCGTTTATTGATGCAGAGCATGCACTTGACCCGCAGTATGCACGTAAACTTGG
CGTAGATATTGATAACCTGCTGGTTTCCCAGCCAGATAATGGTGAACAGGCATTAGAAATTGCAGACATGCTGGTACGCT
CGGGAGCAATTGACCTGATCGTAGTCGACTCCGTTGCTGCCTTGACCCCACGTGCCGAGATTGAAGGCGAAATGGGTGAT
TCACATATGGGGCTGCAAGCTCGACTGATGAGCCAGGCACTGCGTAAGATTACCGGTAATGCTAAGCGTTCTAACTGTAT
GGTAATCTTCATTAACCAGATTCGTATGAAAATCGGTGTAATGTTTGGTAGTCCTGAGACTACAACTGGTGGTAATGCAT
TAAAATTCTATGCATCAGTCCGTCTGGATATTCGCCGTATCGGTCAAGTAAAAGAAGGCGATGAAATTATTGGCTCTGAA
ACCAAAGTTAAAGTCGTCAAGAATAAAATGGCGCCTCCTTTTAAAGAAGCACTATTTCAGATTCTTTATGGCAAAGGGGT
TAACCATCTCGGCGAGTTGATTGATTTAGCTGTTCAGCAAGAAATCATCCAGAAAGCTGGTGCATGGTACTCTTACCAAG
GTAATAAAATTGGCCAAGGCAAGAATAATGTGATTCGCCATCTGGAAGAGAATCCGGAGCTGGCAGTAGAAGTTGAGCGT
CTTATTCGTGAGCAGCTCTTAACTACTAATAATGCGCCGGTGGCAGAAGATGAAGCAGAAGAAGTCCCGGACTTCCTAGA
AAGTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062BY64

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

91.691

100

0.92
  recA Acinetobacter baumannii D1279779

91.329

99.425

0.908
  recA Pseudomonas stutzeri DSM 10701

74.128

98.851

0.733
  recA Vibrio cholerae strain A1552

73.112

95.115

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.112

95.115

0.695
  recA Glaesserella parasuis strain SC1401

71.818

94.828

0.681
  recA Ralstonia pseudosolanacearum GMI1000

70.642

93.966

0.664
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae MS11

68.827

93.103

0.641
  recA Neisseria gonorrhoeae strain FA1090

68.827

93.103

0.641
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.955

95.115

0.618
  recA Helicobacter pylori strain NCTC11637

61.628

98.851

0.609
  recA Helicobacter pylori 26695

61.337

98.851

0.606
  recA Streptococcus mutans UA159

61.047

98.851

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.914

93.966

0.601
  recA Streptococcus mitis NCTC 12261

60.29

99.138

0.598
  recA Streptococcus pneumoniae TIGR4

59.884

98.851

0.592
  recA Streptococcus pneumoniae Rx1

59.884

98.851

0.592
  recA Streptococcus pneumoniae D39

59.884

98.851

0.592
  recA Streptococcus pneumoniae R6

59.884

98.851

0.592
  recA Streptococcus mitis SK321

60.234

98.276

0.592
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.577

93.678

0.586
  recA Streptococcus pyogenes NZ131

62.154

93.391

0.58
  recA Bacillus subtilis subsp. subtilis str. 168

60.423

95.115

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.353

97.701

0.56
  recA Lactococcus lactis subsp. cremoris KW2

59.443

92.816

0.552

Multiple sequence alignment