Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DM480_RS13635 Genome accession   NZ_CP029985
Coordinates   2875410..2876483 (+) Length   357 a.a.
NCBI ID   WP_115379847.1    Uniprot ID   A0A345WRS2
Organism   Sphingomonas sp. FARSPH     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2870410..2881483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DM480_RS13610 (DM480_13610) - 2870779..2871132 (+) 354 WP_115379838.1 exonuclease domain-containing protein -
  DM480_RS13615 (DM480_13615) - 2871126..2871674 (+) 549 WP_115379840.1 hypothetical protein -
  DM480_RS13620 (DM480_13620) - 2871759..2872206 (-) 448 Protein_2702 aldehyde dehydrogenase family protein -
  DM480_RS13625 (DM480_13625) - 2872587..2873957 (-) 1371 WP_115379842.1 hypothetical protein -
  DM480_RS13630 (DM480_13630) - 2874210..2875226 (-) 1017 WP_115379844.1 LacI family DNA-binding transcriptional regulator -
  DM480_RS13635 (DM480_13635) recA 2875410..2876483 (+) 1074 WP_115379847.1 recombinase RecA Machinery gene
  DM480_RS13640 (DM480_13640) - 2876847..2877677 (+) 831 WP_115381363.1 methyltransferase domain-containing protein -
  DM480_RS13645 (DM480_13645) - 2877674..2878309 (+) 636 WP_115379849.1 glutathione S-transferase -
  DM480_RS13650 (DM480_13650) - 2878318..2879640 (-) 1323 WP_115379851.1 dicarboxylate/amino acid:cation symporter -
  DM480_RS13655 (DM480_13655) - 2879716..2880972 (+) 1257 WP_115379853.1 Xaa-Pro peptidase family protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38348.80 Da        Isoelectric Point: 5.5677

>NTDB_id=298081 DM480_RS13635 WP_115379847.1 2875410..2876483(+) (recA) [Sphingomonas sp. FARSPH]
MAANLKVIDSGMASANADRQKALDAALAQIDRAFGKGSAMKLGQKEAMQVEAISTGSLGLDIALGVGGLPRGRVIEVYGP
ESSGKTTLALHVIAEAQKNGGTAAFVDAEHALDPVYAKKLGVNIDELIVSQPDTGEQALEITDTLVRSNAIDVLVVDSVA
ALVPRAEIEGEMGDSHVGLQARLMSQSLRKLTGSISRSRCMVIFINQLRMKIGVMYGNPETTTGGNALKFYASVRLDIRR
TGAIKDRDEVTGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKIGEILDLGVKAGLVEKSGAWFSYDSTRIGQGRENAKN
FLRENPDMADRLERAIRQRTEKVAEEMMTGPDADDDL

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=298081 DM480_RS13635 WP_115379847.1 2875410..2876483(+) (recA) [Sphingomonas sp. FARSPH]
ATGGCCGCCAATCTGAAAGTGATCGACTCCGGCATGGCTAGTGCAAACGCAGACCGTCAGAAGGCGCTCGACGCCGCCCT
CGCGCAGATCGACCGCGCCTTCGGCAAGGGCTCGGCGATGAAGCTGGGGCAAAAGGAAGCGATGCAGGTCGAGGCGATTT
CTACGGGCTCGCTCGGGCTCGACATTGCGCTTGGCGTCGGCGGCCTGCCGCGCGGTCGCGTGATCGAGGTCTATGGCCCC
GAATCGTCCGGCAAGACGACGCTGGCGCTCCACGTCATCGCGGAGGCGCAGAAGAACGGCGGCACCGCCGCCTTCGTCGA
TGCCGAACACGCGCTCGATCCCGTCTATGCCAAGAAGCTGGGCGTCAACATCGACGAACTGATCGTGTCGCAGCCCGATA
CGGGCGAACAGGCACTGGAGATCACCGATACGCTGGTGCGCTCGAACGCCATCGACGTGCTCGTCGTCGATTCGGTCGCC
GCGCTCGTGCCGCGCGCGGAAATCGAGGGCGAGATGGGCGACAGCCACGTCGGCCTGCAGGCGCGTCTGATGTCGCAGTC
GTTGCGCAAGCTCACCGGCTCGATCAGCCGCTCGCGCTGCATGGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCG
TGATGTACGGCAATCCGGAAACGACGACGGGCGGCAACGCGCTCAAATTCTACGCCTCCGTCCGTCTCGACATCCGCCGC
ACCGGCGCGATCAAGGACCGTGACGAGGTCACTGGCAACGCGACCCGCGTCAAGGTGGTCAAGAACAAGGTCGCGCCGCC
GTTCAAGCAGGTCGAATTCGACATCATGTATGGCGAAGGCATCTCGAAGATCGGCGAGATCCTCGATCTTGGCGTCAAGG
CGGGCCTCGTCGAAAAGTCGGGCGCGTGGTTCAGCTACGATAGCACGCGCATCGGGCAGGGTCGGGAGAATGCGAAGAAT
TTCCTGCGCGAGAACCCCGACATGGCCGATCGCCTCGAACGCGCGATCCGTCAGCGGACCGAAAAGGTCGCGGAGGAAAT
GATGACCGGCCCGGATGCGGACGACGATCTTTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A345WRS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.047

94.678

0.644
  recA Ralstonia pseudosolanacearum GMI1000

70.336

91.597

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.358

93.838

0.641
  recA Vibrio cholerae strain A1552

68.358

93.838

0.641
  recA Glaesserella parasuis strain SC1401

67.059

95.238

0.639
  recA Neisseria gonorrhoeae MS11

69.47

89.916

0.625
  recA Neisseria gonorrhoeae MS11

69.47

89.916

0.625
  recA Neisseria gonorrhoeae strain FA1090

69.47

89.916

0.625
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.569

93.557

0.613
  recA Bacillus subtilis subsp. subtilis str. 168

67.492

90.476

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.717

94.958

0.605
  recA Helicobacter pylori strain NCTC11637

63.314

94.678

0.599
  recA Acinetobacter baumannii D1279779

66.46

90.196

0.599
  recA Acinetobacter baylyi ADP1

65.839

90.196

0.594
  recA Helicobacter pylori 26695

62.722

94.678

0.594
  recA Latilactobacillus sakei subsp. sakei 23K

64.087

90.476

0.58
  recA Streptococcus mitis NCTC 12261

59.824

95.518

0.571
  recA Streptococcus pneumoniae R6

59.475

96.078

0.571
  recA Streptococcus pneumoniae TIGR4

59.475

96.078

0.571
  recA Streptococcus pneumoniae Rx1

59.475

96.078

0.571
  recA Streptococcus pneumoniae D39

59.475

96.078

0.571
  recA Streptococcus pyogenes NZ131

59.531

95.518

0.569
  recA Streptococcus mitis SK321

59.531

95.518

0.569
  recA Streptococcus mutans UA159

58.065

95.518

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

91.036

0.555
  recA Lactococcus lactis subsp. cremoris KW2

60.308

91.036

0.549

Multiple sequence alignment