Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BPET_RS10440 Genome accession   NC_010170
Coordinates   2146234..2147307 (+) Length   357 a.a.
NCBI ID   WP_012248972.1    Uniprot ID   -
Organism   Bordetella petrii     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2141234..2152307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPET_RS10420 (Bpet2052) - 2141356..2141574 (+) 219 WP_012248968.1 hypothetical protein -
  BPET_RS10425 (Bpet2053) - 2141947..2143623 (-) 1677 WP_012248969.1 MFS transporter -
  BPET_RS10430 (Bpet2054) - 2143810..2145186 (-) 1377 WP_012248970.1 sensor histidine kinase -
  BPET_RS10435 (Bpet2055) - 2145302..2145991 (-) 690 WP_012248971.1 response regulator transcription factor -
  BPET_RS10440 (Bpet2056) recA 2146234..2147307 (+) 1074 WP_012248972.1 recombinase RecA Machinery gene
  BPET_RS10445 (Bpet2057) recX 2147304..2147861 (+) 558 WP_012248973.1 recombination regulator RecX -
  BPET_RS10450 (Bpet2058) - 2147892..2148812 (-) 921 WP_012248974.1 LysR family transcriptional regulator -
  BPET_RS10455 (Bpet2059) metE 2148971..2151265 (+) 2295 WP_012248975.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  BPET_RS10460 (Bpet2060) - 2151397..2151996 (+) 600 WP_012248976.1 DUF2889 domain-containing protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38230.55 Da        Isoelectric Point: 5.0621

>NTDB_id=29738 BPET_RS10440 WP_012248972.1 2146234..2147307(+) (recA) [Bordetella petrii]
MNDKSSKAAASEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGK
TTLTLQVIAEMQKIGGTCAFVDAEHALDVQYAAKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGSIK
KGEEVVGNETRVKVVKNKVSPPFKQAEFDIMYGAGISREGEIIDLGVQAGVVDKSGAWYSYSGTRIGQGKDNVREYLKEH
PELAVEIENKVRENQGIVSRAATFPASEAEAEDDGQA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=29738 BPET_RS10440 WP_012248972.1 2146234..2147307(+) (recA) [Bordetella petrii]
ATGAACGACAAATCCAGCAAGGCAGCCGCATCGGAAAAAGCCAAGGCGCTGGCCGCCGCGCTTTCGCAGATCGAAAAGCA
GTTCGGCAAGGGCTCGATCATGCGCTACGGCGACAACGAGGTCGAACACGATATCCAGGTCGTGTCCACCGGCTCGCTGG
GCCTCGACATCGCCCTGGGGGTCGGCGGCCTGCCGCGGGGGCGCGTCATCGAAATCTACGGCCCTGAGTCCTCGGGCAAA
ACCACGCTTACCCTGCAGGTCATCGCCGAAATGCAGAAAATCGGCGGCACCTGCGCCTTTGTGGATGCCGAGCACGCGCT
CGACGTCCAATACGCGGCCAAGCTGGGCGTCAACCTTACCGACTTGCTCATTTCGCAACCCGACACCGGCGAGCAGGCGC
TCGAAATCACCGACGCCCTGGTGCGCTCGGGTTCGGTCGACCTCATCGTCATCGACTCGGTCGCGGCCCTGGTGCCCAAG
GCCGAAATCGAAGGCGAAATGGGCGACTCCCTGCCGGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCAC
CGCCACCATCAAGCGCACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTCATGTTCGGCAACC
CCGAAACCACCACCGGCGGCAACGCGCTGAAGTTCTACTCGTCGGTGCGCCTCGACATCCGCCGCATTGGCTCCATCAAG
AAGGGCGAAGAGGTCGTAGGCAACGAAACCCGCGTCAAGGTCGTGAAGAACAAGGTCTCGCCTCCGTTCAAACAGGCCGA
GTTCGACATCATGTACGGCGCGGGCATCTCCCGCGAAGGCGAAATCATCGATCTGGGCGTGCAGGCTGGCGTGGTCGACA
AATCGGGTGCCTGGTACAGCTATAGCGGCACCCGTATCGGCCAGGGCAAGGACAACGTGCGCGAATACCTGAAAGAGCAC
CCCGAACTCGCCGTCGAGATCGAAAACAAGGTGCGCGAGAACCAGGGCATCGTCAGCCGCGCGGCCACCTTTCCCGCCAG
CGAAGCCGAGGCCGAAGACGACGGCCAGGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(15-277)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.844

97.199

0.796
  recA Pseudomonas stutzeri DSM 10701

71.802

96.359

0.692
  recA Neisseria gonorrhoeae MS11

72.561

91.877

0.667
  recA Neisseria gonorrhoeae MS11

72.561

91.877

0.667
  recA Neisseria gonorrhoeae strain FA1090

72.561

91.877

0.667
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.52

89.916

0.661
  recA Vibrio cholerae strain A1552

73.52

89.916

0.661
  recA Acinetobacter baylyi ADP1

68.713

95.798

0.658
  recA Glaesserella parasuis strain SC1401

69.231

94.678

0.655
  recA Acinetobacter baumannii D1279779

72.586

89.916

0.653
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.055

91.597

0.605
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.951

91.317

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

91.597

0.591
  recA Helicobacter pylori 26695

63.939

92.437

0.591
  recA Helicobacter pylori strain NCTC11637

63.636

92.437

0.588
  recA Latilactobacillus sakei subsp. sakei 23K

63.526

92.157

0.585
  recA Streptococcus pneumoniae Rx1

60.237

94.398

0.569
  recA Streptococcus pneumoniae D39

60.237

94.398

0.569
  recA Streptococcus pneumoniae R6

60.237

94.398

0.569
  recA Streptococcus pneumoniae TIGR4

60.237

94.398

0.569
  recA Streptococcus mitis SK321

59.118

95.238

0.563
  recA Streptococcus mitis NCTC 12261

59.118

95.238

0.563
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.976

91.877

0.56
  recA Streptococcus pyogenes NZ131

59.403

93.838

0.557
  recA Streptococcus mutans UA159

58.187

95.798

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.647

95.238

0.549

Multiple sequence alignment