Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C9I47_RS11225 Genome accession   NZ_CP029843
Coordinates   2574116..2575147 (-) Length   343 a.a.
NCBI ID   WP_111266816.1    Uniprot ID   A0A2U9TDR7
Organism   Marilutibacter maris strain HZ9B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2569116..2580147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9I47_RS11210 (C9I47_2043) csrA 2570173..2570373 (-) 201 WP_111266814.1 carbon storage regulator CsrA -
  C9I47_RS11215 (C9I47_2044) alaS 2570520..2573180 (-) 2661 WP_111266815.1 alanine--tRNA ligase -
  C9I47_RS11220 (C9I47_2045) recX 2573504..2574028 (-) 525 WP_111268102.1 recombination regulator RecX -
  C9I47_RS11225 (C9I47_2046) recA 2574116..2575147 (-) 1032 WP_111266816.1 recombinase RecA Machinery gene
  C9I47_RS11230 (C9I47_2047) lexA 2575358..2576002 (-) 645 WP_111266817.1 transcriptional repressor LexA -
  C9I47_RS11235 (C9I47_2048) - 2576562..2577062 (-) 501 WP_111266818.1 CinA family protein -
  C9I47_RS11240 (C9I47_2049) - 2577138..2579807 (-) 2670 WP_111266819.1 TonB-dependent receptor -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 36944.39 Da        Isoelectric Point: 4.9608

>NTDB_id=296280 C9I47_RS11225 WP_111266816.1 2574116..2575147(-) (recA) [Marilutibacter maris strain HZ9B]
MDENKKRALSAALGQIEKQFGKGSVMRMGDRVVEAAEVIGTGSLMLDIALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
QCQKAGGTAAFIDAEHALDPIYAAKLGVNVDELLLSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCLVIFINQLRMKIGIMMPGQSPETTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKMAPPFKQVITEILYGEGISREGELIDMGVNAKIVDKAGAWYSYGDERIGQGKENARNYLKENPEVATRL
ENALREQFVPAEANRDEDGGDED

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=296280 C9I47_RS11225 WP_111266816.1 2574116..2575147(-) (recA) [Marilutibacter maris strain HZ9B]
ATGGACGAGAACAAGAAGCGCGCCCTCTCAGCCGCCCTGGGCCAGATCGAAAAGCAGTTCGGCAAAGGCTCGGTCATGCG
CATGGGCGACCGGGTGGTCGAGGCGGCCGAGGTGATCGGGACCGGTTCGCTGATGCTGGACATCGCGCTGGGCATCGGTG
GCCTGCCCAAGGGTCGCGTGGTCGAGATCTACGGACCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCGATCGCG
CAGTGTCAGAAGGCCGGCGGCACCGCCGCCTTCATCGATGCCGAGCATGCGCTGGACCCGATCTATGCGGCCAAGCTCGG
CGTCAACGTCGACGAGCTGCTGCTGTCGCAGCCCGATACCGGCGAGCAGGCGCTGGAGATCGCCGACATGCTGGTGCGCT
CGGGCGCGGTCGACATGGTCGTGGTCGACTCGGTCGCCGCGCTGACCCCCAAGGCCGAGATCGAGGGCGAGATGGGCGAC
CAACTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCAGCAACTGCCT
GGTGATCTTCATCAACCAGCTGCGCATGAAGATCGGCATCATGATGCCCGGCCAGAGCCCCGAGACCACCACCGGCGGCA
ATGCGCTGAAGTTCTATGCCTCGGTGCGCCTGGACATCCGCCGTATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGGATCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCAAGCAGGTCATCACCGAGATCCTGTACGGCGA
AGGCATCTCGCGCGAAGGCGAGCTGATCGACATGGGCGTGAACGCCAAGATCGTCGACAAGGCGGGCGCCTGGTACAGCT
ACGGTGACGAGCGGATCGGGCAGGGCAAGGAAAACGCCCGCAACTACCTGAAGGAGAACCCCGAGGTCGCGACCAGGCTC
GAGAACGCCCTGCGCGAGCAGTTCGTGCCGGCCGAGGCCAACCGCGACGAGGACGGTGGTGACGAGGATTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U9TDR7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

73.134

97.668

0.714
  recA Acinetobacter baumannii D1279779

72.754

97.376

0.708
  recA Pseudomonas stutzeri DSM 10701

72.455

97.376

0.706
  recA Vibrio cholerae strain A1552

72.289

96.793

0.7
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.289

96.793

0.7
  recA Ralstonia pseudosolanacearum GMI1000

75.08

91.254

0.685
  recA Neisseria gonorrhoeae MS11

69.939

95.044

0.665
  recA Neisseria gonorrhoeae MS11

69.939

95.044

0.665
  recA Neisseria gonorrhoeae strain FA1090

69.939

95.044

0.665
  recA Glaesserella parasuis strain SC1401

69.659

94.169

0.656
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.154

94.752

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.063

97.085

0.612
  recA Streptococcus mitis SK321

60.933

100

0.609
  recA Helicobacter pylori strain NCTC11637

63.415

95.627

0.606
  recA Helicobacter pylori 26695

63.11

95.627

0.604
  recA Streptococcus mutans UA159

60.882

99.125

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.752

0.598
  recA Latilactobacillus sakei subsp. sakei 23K

61.377

97.376

0.598
  recA Streptococcus pneumoniae D39

62.195

95.627

0.595
  recA Streptococcus pneumoniae TIGR4

62.195

95.627

0.595
  recA Streptococcus pneumoniae R6

62.195

95.627

0.595
  recA Streptococcus mitis NCTC 12261

62.195

95.627

0.595
  recA Streptococcus pneumoniae Rx1

62.195

95.627

0.595
  recA Streptococcus pyogenes NZ131

60.606

96.21

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.697

96.21

0.574
  recA Lactococcus lactis subsp. cremoris KW2

60.615

94.752

0.574

Multiple sequence alignment