Detailed information NTG0296043

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: DLE54_RS09355
• Genome accession: NZ_CP029789
• Coordinates: 2293444..2294493 (+)
• Length: 349 a.a.
• NCBI ID: WP_011961195.1
• Uniprot ID: A0AAT9PC61
• Organism: Psychrobacter sp. YP14
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	2279370..2315455	2293444..2294493	within	0

Gene organization within MGE regions

Location: 2279370..2315455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DLE54_RS09300 (DLE54_09300)	-	2279370..2280509 (+)	1140	WP_110816966.1	PhoH family protein	-
DLE54_RS09305 (DLE54_09305)	ybeY	2280666..2281223 (+)	558	WP_110817379.1	rRNA maturation RNase YbeY	-
DLE54_RS09310 (DLE54_09310)	-	2281338..2282798 (+)	1461	WP_110816967.1	lytic murein transglycosylase	-
DLE54_RS09315 (DLE54_09315)	-	2283012..2283944 (-)	933	WP_110816968.1	lysozyme inhibitor LprI family protein	-
DLE54_RS09320 (DLE54_09320)	-	2284185..2284616 (-)	432	WP_197708889.1	adhesin	-
DLE54_RS09325 (DLE54_09325)	fumC	2285007..2286395 (-)	1389	WP_110816969.1	class II fumarate hydratase	-
DLE54_RS09330 (DLE54_09330)	-	2286582..2287196 (+)	615	WP_110816970.1	5-formyltetrahydrofolate cyclo-ligase	-
DLE54_RS09335 (DLE54_09335)	-	2287206..2287517 (+)	312	WP_110816971.1	hypothetical protein	-
DLE54_RS09340 (DLE54_09340)	-	2287653..2289047 (-)	1395	WP_197708890.1	Na+/H+ antiporter family protein	-
DLE54_RS09345 (DLE54_09345)	lon	2289546..2292125 (+)	2580	WP_227535200.1	endopeptidase La	-
DLE54_RS09350 (DLE54_09350)	-	2292371..2292922 (+)	552	WP_011961194.1	superoxide dismutase family protein	-
DLE54_RS09355 (DLE54_09355)	recA	2293444..2294493 (+)	1050	WP_011961195.1	recombinase RecA	Machinery gene
DLE54_RS09360 (DLE54_09360)	-	2294640..2295875 (+)	1236	WP_110816973.1	regulatory protein RecX	-
DLE54_RS09365 (DLE54_09365)	-	2295916..2296515 (-)	600	WP_110816974.1	GNAT family N-acetyltransferase	-
DLE54_RS09370 (DLE54_09370)	truD	2296649..2297818 (+)	1170	WP_110816975.1	tRNA pseudouridine(13) synthase TruD	-
DLE54_RS09375 (DLE54_09375)	-	2297842..2298771 (-)	930	WP_011961199.1	PHP domain-containing protein	-
DLE54_RS09380 (DLE54_09380)	ispZ	2299009..2299578 (+)	570	WP_011961200.1	septation protein IspZ	-
DLE54_RS09385 (DLE54_09385)	-	2299609..2299905 (+)	297	WP_041773804.1	YciI family protein	-
DLE54_RS09390 (DLE54_09390)	-	2299942..2300508 (+)	567	WP_110816976.1	hypothetical protein	-
DLE54_RS09395 (DLE54_09395)	mnmD	2300579..2302798 (+)	2220	WP_110816977.1	tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD	-
DLE54_RS09400 (DLE54_09400)	-	2302838..2303644 (-)	807	WP_011961204.1	ThiF family adenylyltransferase	-
DLE54_RS09405 (DLE54_09405)	-	2303752..2304642 (-)	891	WP_110816978.1	TatD family hydrolase	-
DLE54_RS09410 (DLE54_09410)	-	2304632..2304862 (-)	231	WP_041773359.1	hypothetical protein	-
DLE54_RS09415 (DLE54_09415)	-	2305163..2310262 (-)	5100	WP_110816979.1	hypothetical protein	-
DLE54_RS09420 (DLE54_09420)	-	2310265..2310741 (-)	477	WP_264755949.1	protein kinase	-
DLE54_RS09425 (DLE54_09425)	-	2310734..2312719 (-)	1986	WP_110816981.1	integrase	-
DLE54_RS09430 (DLE54_09430)	-	2312720..2314285 (-)	1566	WP_110816982.1	site-specific integrase	-
DLE54_RS09435 (DLE54_09435)	-	2314295..2315455 (-)	1161	WP_110816983.1	tyrosine-type recombinase/integrase	-

Sequence

Protein

• Length: 349 a.a.
• Molecular weight: 37371.69 Da
• Isoelectric Point: 4.6944

>NTDB_id=296043 DLE54_RS09355 WP_011961195.1 2293444..2294493(+) (recA) [Psychrobacter sp. YP14]
MDDNKAKALKAALGQIEKQFGKNTIMHLGDNSATLDVDVVSTGSLGLDIALGIGGLPKGRIIEIYGPESSGKTTLTLQAI
AECQKQGGTCAFIDAEHALDPIYARKLGVNTDDLLVSQPDNGEQALEITDMLVRSGALDMIVIDSVAALTPRAEIEGEMG
DSHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKSGDEIIGN
QTRVKVIKNKMAPPFRQAEFEITYGEGTNHLAEVIDLGVEIGVVGKAGAWYSYGDEKIGQGKANSVLFLKDNPAIAEEIE
AKIRAEKLAVEPEKGAEAVDEVEPESEVE

Nucleotide

• Length: 1050 bp

>NTDB_id=296043 DLE54_RS09355 WP_011961195.1 2293444..2294493(+) (recA) [Psychrobacter sp. YP14]
ATGGATGACAATAAAGCCAAAGCGTTAAAAGCAGCCTTAGGCCAAATCGAAAAACAATTTGGTAAAAACACCATTATGCA
TTTGGGCGATAACTCAGCCACGCTGGATGTGGACGTGGTCTCTACCGGCTCACTTGGCTTAGATATTGCTTTAGGTATTG
GCGGTTTGCCAAAAGGTCGTATTATTGAGATTTATGGCCCAGAAAGCTCAGGTAAAACCACATTGACCTTGCAAGCCATT
GCTGAGTGTCAAAAACAAGGCGGTACTTGTGCCTTTATCGATGCCGAACACGCTTTAGATCCCATCTATGCCCGTAAACT
TGGGGTAAATACTGATGACTTATTGGTGTCTCAGCCTGATAATGGTGAGCAAGCGCTTGAGATTACCGACATGCTGGTGC
GTTCAGGCGCATTAGACATGATTGTTATTGACTCGGTCGCTGCCCTTACCCCGCGTGCGGAGATTGAAGGTGAGATGGGT
GACAGCCACATGGGCTTGCAGGCGCGTCTAATGAGTCAGGCGCTACGTAAAATCACCGGTAACGCCAAACGCTCAAACTG
TATGGTTATCTTTATTAACCAAATTCGTATGAAAATTGGGGTTATGTTCGGTTCGCCTGAAACCACAACCGGTGGTAATG
CCCTTAAATTCTACGCCTCAGTACGTCTAGATATTCGCCGTATTGGCGCGGTGAAAAGCGGTGATGAAATCATTGGTAAC
CAAACCCGTGTTAAAGTTATCAAAAACAAAATGGCGCCACCATTCCGTCAAGCTGAGTTTGAGATTACTTATGGTGAAGG
CACCAACCACTTGGCTGAAGTGATCGACTTAGGGGTTGAGATTGGCGTGGTCGGTAAGGCCGGTGCATGGTACAGCTATG
GCGATGAAAAAATTGGGCAAGGTAAAGCCAACTCAGTGTTGTTCTTAAAAGACAATCCCGCCATTGCTGAAGAGATTGAA
GCCAAAATCCGTGCCGAAAAGCTGGCGGTAGAGCCAGAAAAAGGGGCTGAAGCTGTAGATGAGGTTGAGCCTGAATCTGA
AGTCGAATAG

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Acinetobacter baylyi ADP1	77.011	99.713	0.768
recA	Acinetobacter baumannii D1279779	76.812	98.854	0.759
recA	Pseudomonas stutzeri DSM 10701	72.434	97.708	0.708
recA	Vibrio cholerae strain A1552	69.341	100	0.693
recA	Vibrio cholerae O1 biovar El Tor strain E7946	69.341	100	0.693
recA	Glaesserella parasuis strain SC1401	68.678	99.713	0.685
recA	Ralstonia pseudosolanacearum GMI1000	71.037	93.983	0.668
recA	Neisseria gonorrhoeae strain FA1090	69.538	93.123	0.648
recA	Neisseria gonorrhoeae MS11	69.538	93.123	0.648
recA	Neisseria gonorrhoeae MS11	69.538	93.123	0.648
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	67.692	93.123	0.63
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	63.554	95.129	0.605
recA	Helicobacter pylori strain NCTC11637	64.308	93.123	0.599
recA	Helicobacter pylori 26695	64	93.123	0.596
recA	Bacillus subtilis subsp. subtilis str. 168	63.58	92.837	0.59
recA	Streptococcus mitis SK321	58.017	98.281	0.57
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.491	92.264	0.567
recA	Streptococcus mitis NCTC 12261	58.284	96.848	0.564
recA	Streptococcus mutans UA159	56.16	100	0.562
recA	Latilactobacillus sakei subsp. sakei 23K	60.062	92.55	0.556
recA	Streptococcus pyogenes NZ131	58.896	93.41	0.55
recA	Streptococcus pneumoniae Rx1	58.896	93.41	0.55
recA	Streptococcus pneumoniae D39	58.896	93.41	0.55
recA	Streptococcus pneumoniae R6	58.896	93.41	0.55
recA	Streptococcus pneumoniae TIGR4	58.896	93.41	0.55
recA	Lactococcus lactis subsp. cremoris KW2	59.077	93.123	0.55