Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DMC16_RS09285 Genome accession   NZ_CP029686
Coordinates   1799248..1800441 (+) Length   397 a.a.
NCBI ID   WP_003567844.1    Uniprot ID   A0A829GXG8
Organism   Lacticaseibacillus paracasei strain Lpc10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794248..1805441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DMC16_RS09260 (DMC16_09255) - 1794830..1796812 (+) 1983 WP_003567850.1 fructose-specific PTS transporter subunit EIIC -
  DMC16_RS16260 (DMC16_09260) - 1796861..1797199 (+) 339 WP_003658790.1 hypothetical protein -
  DMC16_RS09270 (DMC16_09265) - 1797519..1797992 (+) 474 WP_110344387.1 hypothetical protein -
  DMC16_RS09280 (DMC16_09275) - 1798150..1798848 (-) 699 WP_003567846.1 DUF554 domain-containing protein -
  DMC16_RS09285 (DMC16_09280) recA 1799248..1800441 (+) 1194 WP_003567844.1 recombinase RecA Machinery gene
  DMC16_RS09290 (DMC16_09285) - 1800746..1801948 (-) 1203 WP_003567842.1 PLP-dependent aminotransferase family protein -
  DMC16_RS09295 (DMC16_09290) - 1802198..1803100 (+) 903 WP_003567840.1 LysR family transcriptional regulator -
  DMC16_RS09300 (DMC16_09295) - 1803106..1803588 (-) 483 WP_003567838.1 ribonuclease H -
  DMC16_RS09305 (DMC16_09300) - 1803685..1804497 (+) 813 WP_003567836.1 Cof-type HAD-IIB family hydrolase -
  DMC16_RS09310 (DMC16_09305) - 1804542..1805228 (+) 687 WP_003567833.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 397 a.a.        Molecular weight: 43028.73 Da        Isoelectric Point: 5.1689

>NTDB_id=295303 DMC16_RS09285 WP_003567844.1 1799248..1800441(+) (recA) [Lacticaseibacillus paracasei strain Lpc10]
MAKKTTAKNDNTKSDATDRDTELEKALQKIKKAFGEGAVMKMGDRPELKVDVVSTGILSLDLALGVGGLPRGRIVEVYGP
ESTGKTTIALQTIAELQKSGGKAAYIDAENAMDPKYAAELGVNIDDLLLSQPNSGEQGLEIAEMLIESAAVDIVVIDSVA
ALVPKAEIEGAIGDSHVGLQARLMSQALRKMAGSINNTNTLVIFINQLREKVGVMFGNPEVTPGGRALKFYASVRIEVKR
GQQVKDGKDVVGFASKLKVTKNKVAPPFKSVETTMSFGHGIEHNTDMINLATDKDNDIDVITKSGSWYNYGKERLGQGLV
NASHYLDEHPEISKEIEEKIREQVAPKKPEETDEKQDDKKDDQASADKKTEKTTTTDTEKKADKKDDPASFGVDRLV

Nucleotide


Download         Length: 1194 bp        

>NTDB_id=295303 DMC16_RS09285 WP_003567844.1 1799248..1800441(+) (recA) [Lacticaseibacillus paracasei strain Lpc10]
ATGGCTAAGAAAACGACCGCAAAGAATGATAATACTAAATCCGATGCTACAGATCGCGATACCGAACTAGAAAAAGCCCT
TCAGAAGATCAAGAAAGCCTTTGGTGAAGGTGCCGTCATGAAGATGGGCGATCGACCGGAACTGAAGGTTGATGTCGTCT
CAACAGGCATTTTATCCTTGGATCTTGCACTCGGTGTCGGCGGGTTACCGCGTGGCCGAATCGTTGAAGTCTATGGTCCT
GAAAGTACCGGGAAAACAACGATTGCGTTGCAGACTATTGCCGAATTGCAGAAATCAGGCGGCAAGGCGGCTTACATTGA
CGCCGAAAATGCGATGGATCCGAAGTATGCGGCGGAACTTGGCGTAAATATTGACGACTTACTGTTGTCTCAGCCAAACT
CTGGGGAACAGGGGCTTGAAATTGCTGAAATGCTGATTGAATCAGCGGCTGTTGATATTGTCGTCATTGACTCTGTCGCA
GCCTTGGTTCCCAAGGCTGAAATTGAAGGTGCCATCGGGGATAGCCATGTGGGCTTGCAAGCCCGGCTGATGTCGCAGGC
ACTGCGGAAGATGGCCGGTTCGATCAACAATACCAATACGCTGGTTATTTTCATTAACCAATTGCGTGAAAAAGTTGGCG
TGATGTTTGGCAACCCAGAAGTGACACCGGGCGGCCGTGCCTTGAAATTCTATGCGTCTGTGCGGATTGAAGTCAAGCGT
GGGCAGCAGGTGAAAGACGGCAAAGATGTTGTCGGCTTCGCTAGCAAACTGAAAGTCACTAAGAATAAGGTCGCACCGCC
GTTTAAATCGGTTGAAACCACGATGTCATTTGGTCACGGGATTGAACACAATACCGATATGATTAACTTGGCAACCGATA
AAGACAATGACATTGACGTCATCACCAAGTCTGGCTCTTGGTATAACTATGGCAAGGAACGTTTGGGCCAAGGACTTGTC
AACGCATCTCACTACTTGGATGAACATCCGGAAATTTCTAAGGAAATCGAAGAAAAGATTCGTGAACAAGTTGCGCCAAA
GAAGCCTGAAGAAACCGATGAGAAGCAGGATGATAAGAAAGACGATCAGGCATCTGCTGATAAAAAGACCGAAAAGACAA
CGACCACTGATACTGAAAAGAAAGCCGACAAGAAAGATGACCCTGCCAGCTTTGGGGTTGATCGGTTAGTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A829GXG8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

57.143

95.214

0.544
  recA Streptococcus mitis SK321

56.878

95.214

0.542
  recA Streptococcus mutans UA159

56.836

93.955

0.534
  recA Streptococcus pneumoniae TIGR4

57.493

92.443

0.531
  recA Streptococcus pneumoniae D39

57.493

92.443

0.531
  recA Streptococcus pneumoniae Rx1

57.493

92.443

0.531
  recA Streptococcus pneumoniae R6

57.493

92.443

0.531
  recA Streptococcus pyogenes NZ131

59.71

86.902

0.519
  recA Latilactobacillus sakei subsp. sakei 23K

62.963

81.612

0.514
  recA Bacillus subtilis subsp. subtilis str. 168

61.774

82.368

0.509
  recA Lactococcus lactis subsp. cremoris KW2

58.892

86.398

0.509
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.598

85.894

0.486
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

53.672

89.169

0.479
  recA Acinetobacter baylyi ADP1

54.81

86.398

0.474
  recA Pseudomonas stutzeri DSM 10701

58.075

81.108

0.471
  recA Glaesserella parasuis strain SC1401

53.736

87.657

0.471
  recA Ralstonia pseudosolanacearum GMI1000

58.413

79.345

0.463
  recA Acinetobacter baumannii D1279779

55.657

82.368

0.458
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae MS11

57.643

79.093

0.456
  recA Neisseria gonorrhoeae strain FA1090

57.643

79.093

0.456
  recA Vibrio cholerae O1 biovar El Tor strain E7946

53.211

82.368

0.438
  recA Vibrio cholerae strain A1552

53.211

82.368

0.438
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

52.469

81.612

0.428
  recA Helicobacter pylori strain NCTC11637

51.368

82.872

0.426
  recA Helicobacter pylori 26695

51.368

82.872

0.426

Multiple sequence alignment