Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DLJ48_RS01075 Genome accession   NZ_CP029684
Coordinates   205495..206631 (-) Length   378 a.a.
NCBI ID   WP_128685129.1    Uniprot ID   A0AAJ1VNI3
Organism   Oenococcus sicerae strain UCMA15228     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 200495..211631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ48_RS01060 (DLJ48_01075) - 201146..203002 (-) 1857 WP_128685123.1 ABC transporter ATP-binding protein -
  DLJ48_RS01065 (DLJ48_01080) - 202995..204746 (-) 1752 WP_128685125.1 ABC transporter ATP-binding protein -
  DLJ48_RS01070 (DLJ48_01085) trhA 204792..205445 (-) 654 WP_128685127.1 PAQR family membrane homeostasis protein TrhA -
  DLJ48_RS01075 (DLJ48_01090) recA 205495..206631 (-) 1137 WP_128685129.1 recombinase RecA Machinery gene
  DLJ48_RS01080 (DLJ48_01095) pgsA 206749..207309 (-) 561 WP_128685131.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DLJ48_RS01085 (DLJ48_01100) - 207306..208295 (-) 990 WP_128685133.1 helix-turn-helix domain-containing protein -
  DLJ48_RS01090 (DLJ48_01105) yfmH 208318..209595 (-) 1278 WP_128685135.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DLJ48_RS01095 (DLJ48_01110) yfmF 209585..210838 (-) 1254 WP_128685137.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 40253.50 Da        Isoelectric Point: 4.8283

>NTDB_id=295229 DLJ48_RS01075 WP_128685129.1 205495..206631(-) (recA) [Oenococcus sicerae strain UCMA15228]
MASGRKAALDAALKKIEKDFGKGSIMRLGENVHTNVEVISTGSLKLDIALGVGGYPKGRIIEVFGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENSLDAKYAEALGVNVDDLLLSQPDTGEQGLEIADDLVNSGAIDMLVIDSVAALVPRAEIEGEMGD
THVGLQARLMSQALRKLAGTLNRTGTIAIFINQIREKIGVMFGNPETTPGGRALKFYSTVRLEVRRSTQIKDGTVIVGNN
TKIKVVKNKVAPPFRVAEVDIMYGKGISQTGELIDLAVDKDIVDKSGAWYAYKGEKIGQGRVNAVTWLEDPAHKKEHDVI
FKAVRDAYGIGEKADPAADTDPGKAVPIDDSASDPFSDPNYNPKSSGSDDALSDDDIY

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=295229 DLJ48_RS01075 WP_128685129.1 205495..206631(-) (recA) [Oenococcus sicerae strain UCMA15228]
ATGGCTAGTGGTAGAAAAGCTGCTCTTGATGCAGCACTTAAGAAAATTGAAAAGGATTTTGGCAAAGGGTCGATCATGCG
TTTGGGTGAGAATGTTCACACAAATGTTGAAGTTATCTCAACTGGTTCTTTAAAACTTGATATTGCTCTTGGTGTCGGAG
GCTATCCGAAGGGTCGAATCATTGAAGTTTTTGGCCCAGAATCCTCTGGTAAAACGACTGTGGCTTTGCATGCAGTTGCT
GAAGTTCAAAAACAGGGTGGTACAGCTGCTTATATTGATGCTGAAAACTCTTTAGATGCTAAATATGCAGAAGCGCTTGG
CGTTAACGTTGATGATTTATTGTTGAGCCAACCGGATACTGGTGAGCAAGGTTTGGAAATTGCTGATGATCTGGTAAATT
CTGGTGCCATTGACATGCTGGTAATAGACTCAGTTGCCGCGTTGGTTCCTCGTGCTGAAATCGAAGGTGAAATGGGCGAT
ACACATGTTGGTTTACAGGCACGCTTGATGAGCCAAGCGCTTCGTAAATTAGCAGGTACCTTGAATCGAACAGGCACCAT
TGCGATTTTCATTAATCAAATTCGTGAAAAGATTGGTGTGATGTTTGGCAATCCGGAGACAACTCCTGGTGGTCGTGCAT
TAAAATTTTATTCAACGGTTCGTCTGGAGGTTCGCCGCTCTACACAAATTAAAGATGGCACGGTGATCGTTGGTAATAAT
ACAAAAATCAAAGTGGTTAAAAACAAGGTTGCACCGCCGTTTAGGGTCGCTGAAGTAGATATTATGTATGGTAAAGGTAT
CAGTCAAACTGGTGAATTAATTGATTTAGCTGTTGATAAAGACATCGTCGACAAGTCTGGTGCTTGGTATGCTTACAAGG
GTGAGAAAATTGGACAGGGACGTGTTAATGCAGTCACTTGGTTAGAAGACCCTGCTCATAAAAAAGAACACGACGTCATT
TTCAAAGCTGTTCGTGATGCTTATGGTATTGGAGAGAAAGCGGATCCTGCTGCTGATACTGACCCAGGGAAAGCTGTTCC
GATCGATGATTCAGCTAGCGATCCTTTTTCGGATCCGAACTATAATCCTAAGTCTAGTGGATCTGACGATGCACTTTCTG
ATGATGATATTTATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

76.829

86.772

0.667
  recA Streptococcus mitis NCTC 12261

67.335

92.328

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

69.817

86.772

0.606
  recA Streptococcus pneumoniae TIGR4

68.882

87.566

0.603
  recA Streptococcus pneumoniae R6

68.882

87.566

0.603
  recA Streptococcus pneumoniae Rx1

68.882

87.566

0.603
  recA Streptococcus pneumoniae D39

68.882

87.566

0.603
  recA Streptococcus pyogenes NZ131

68.485

87.302

0.598
  recA Streptococcus mutans UA159

67.365

88.36

0.595
  recA Streptococcus mitis SK321

71.704

82.275

0.59
  recA Lactococcus lactis subsp. cremoris KW2

67.273

87.302

0.587
  recA Vibrio cholerae strain A1552

59.659

93.122

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.659

93.122

0.556
  recA Pseudomonas stutzeri DSM 10701

60.588

89.947

0.545
  recA Ralstonia pseudosolanacearum GMI1000

64.762

83.333

0.54
  recA Neisseria gonorrhoeae MS11

65.064

82.54

0.537
  recA Neisseria gonorrhoeae MS11

65.064

82.54

0.537
  recA Neisseria gonorrhoeae strain FA1090

65.064

82.54

0.537
  recA Acinetobacter baumannii D1279779

65.161

82.011

0.534
  recA Acinetobacter baylyi ADP1

64.839

82.011

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.94

87.831

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.245

86.508

0.521
  recA Glaesserella parasuis strain SC1401

61.95

84.127

0.521
  recA Helicobacter pylori 26695

57.143

88.889

0.508
  recA Helicobacter pylori strain NCTC11637

57.143

88.889

0.508
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.716

80.159

0.495

Multiple sequence alignment