Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C1M51_RS09635 Genome accession   NZ_CP029606
Coordinates   1985274..1986347 (-) Length   357 a.a.
NCBI ID   WP_011827676.1    Uniprot ID   W7W6V8
Organism   Methylibium sp. Pch-M     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980274..1991347
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1M51_RS09610 (C1M51_09545) - 1980602..1981306 (-) 705 WP_129449359.1 TerC family protein -
  C1M51_RS09615 (C1M51_09550) sucD 1981495..1982388 (-) 894 WP_036232217.1 succinate--CoA ligase subunit alpha -
  C1M51_RS09620 (C1M51_09555) sucC 1982409..1983569 (-) 1161 WP_129449361.1 ADP-forming succinate--CoA ligase subunit beta -
  C1M51_RS09625 (C1M51_09560) argC 1983789..1984712 (+) 924 WP_011827674.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  C1M51_RS09630 (C1M51_09565) - 1984718..1985227 (-) 510 WP_011827675.1 RecX family transcriptional regulator -
  C1M51_RS09635 (C1M51_09570) recA 1985274..1986347 (-) 1074 WP_011827676.1 recombinase RecA Machinery gene
  C1M51_RS09640 (C1M51_09575) - 1986489..1987160 (+) 672 WP_011827677.1 response regulator transcription factor -
  C1M51_RS09645 (C1M51_09580) - 1987193..1988722 (+) 1530 WP_129449363.1 sensor histidine kinase -
  C1M51_RS09650 (C1M51_09585) - 1988810..1990111 (+) 1302 WP_129449365.1 patatin-like phospholipase family protein -
  C1M51_RS09655 (C1M51_09590) rodA 1990128..1991285 (-) 1158 WP_129449366.1 rod shape-determining protein RodA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38234.04 Da        Isoelectric Point: 5.0776

>NTDB_id=294050 C1M51_RS09635 WP_011827676.1 1985274..1986347(-) (recA) [Methylibium sp. Pch-M]
MDASVKTLNTEKAKALQAALAQIEKQFGKGTIMRLGEGEVIDDIEVVSTGSLGLDIALGVGGLPRGRVIEIYGPESSGKT
TLTLQVIAEMQKLAGTCAFIDAEHALDSQYAQKLGVNLQELLISQPDTGEQALEIVDALVRSGSVDLIVVDSVAALTPKA
ELEGEMGDSLPGLQARLMSQALRKLTATIKKSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKR
GEEVIGNETKVKVVKNKVSPPFKTAEFDILFGEGVSREGEIIDLGVIAKVIDKSGAWYAYNGEKIGQGKDNSREFLRENP
ELAHEIENKIRESLGVALLPSIEIEVPKGTKQAAAGA

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=294050 C1M51_RS09635 WP_011827676.1 1985274..1986347(-) (recA) [Methylibium sp. Pch-M]
ATGGATGCAAGCGTCAAGACATTGAACACCGAAAAGGCCAAGGCCCTGCAGGCTGCGCTCGCGCAGATCGAGAAGCAGTT
CGGCAAGGGCACGATCATGCGCCTCGGCGAAGGCGAGGTCATCGATGACATCGAGGTGGTGTCCACCGGCTCGCTGGGCC
TGGACATCGCCCTCGGCGTCGGCGGCCTGCCGCGCGGACGCGTCATCGAGATCTACGGTCCCGAGTCCTCGGGCAAGACC
ACGCTCACCCTGCAGGTCATCGCCGAGATGCAGAAGCTGGCCGGCACCTGCGCCTTCATCGATGCCGAGCATGCGCTCGA
CTCGCAGTACGCCCAGAAACTGGGGGTCAACCTGCAGGAGCTGCTGATCTCCCAGCCCGACACCGGCGAGCAAGCGCTCG
AGATCGTCGACGCGCTGGTGCGCTCCGGCTCGGTCGATCTGATCGTTGTCGACTCGGTCGCGGCGCTCACGCCCAAGGCT
GAACTCGAAGGCGAGATGGGCGACTCCCTGCCCGGCCTGCAGGCACGGCTGATGAGCCAGGCGCTGCGCAAGCTCACCGC
GACGATCAAGAAGTCGAACTGCATGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCTCACCCG
AAACCACCACCGGCGGTAACGCGCTGAAGTTCTATGCCTCGGTGCGGCTCGACATCCGCCGCATCGGCAGCATCAAGCGT
GGCGAAGAAGTGATCGGCAACGAGACCAAGGTCAAGGTCGTCAAGAACAAGGTCTCCCCGCCATTCAAGACCGCCGAGTT
CGACATCCTGTTCGGCGAGGGCGTGTCACGCGAGGGCGAGATCATCGACCTGGGCGTCATCGCCAAGGTGATCGACAAGT
CGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAAGGCAAGGACAACAGCCGCGAGTTCCTGCGCGAGAACCCT
GAACTGGCCCACGAGATCGAGAACAAGATTCGTGAATCGCTGGGCGTGGCGCTGCTGCCCAGCATCGAGATCGAAGTCCC
CAAGGGCACCAAGCAGGCGGCTGCCGGCGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(14-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W7W6V8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

81.065

94.678

0.768
  recA Neisseria gonorrhoeae MS11

68.481

97.759

0.669
  recA Neisseria gonorrhoeae MS11

68.481

97.759

0.669
  recA Neisseria gonorrhoeae strain FA1090

68.481

97.759

0.669
  recA Acinetobacter baylyi ADP1

72.477

91.597

0.664
  recA Acinetobacter baumannii D1279779

71.865

91.597

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.56

91.597

0.655
  recA Vibrio cholerae strain A1552

71.56

91.597

0.655
  recA Glaesserella parasuis strain SC1401

72.222

90.756

0.655
  recA Pseudomonas stutzeri DSM 10701

70.948

91.597

0.65
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.674

92.717

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.97

92.437

0.619
  recA Helicobacter pylori 26695

65.046

92.157

0.599
  recA Helicobacter pylori strain NCTC11637

64.742

92.157

0.597
  recA Bacillus subtilis subsp. subtilis str. 168

64.832

91.597

0.594
  recA Lactococcus lactis subsp. cremoris KW2

58.529

95.238

0.557
  recA Latilactobacillus sakei subsp. sakei 23K

60

92.437

0.555
  recA Streptococcus pyogenes NZ131

59.281

93.557

0.555
  recA Streptococcus mutans UA159

58.631

94.118

0.552
  recA Streptococcus pneumoniae R6

58.806

93.838

0.552
  recA Streptococcus pneumoniae Rx1

58.806

93.838

0.552
  recA Streptococcus pneumoniae D39

58.806

93.838

0.552
  recA Streptococcus pneumoniae TIGR4

58.806

93.838

0.552
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.061

91.877

0.552
  recA Streptococcus mitis NCTC 12261

57.941

95.238

0.552
  recA Streptococcus mitis SK321

57.941

95.238

0.552

Multiple sequence alignment