Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CLOS_RS07935 Genome accession   NC_009922
Coordinates   1648151..1649209 (+) Length   352 a.a.
NCBI ID   WP_012159397.1    Uniprot ID   A8MFC2
Organism   Alkaliphilus oremlandii OhILAs     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1643151..1654209
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLOS_RS07920 (Clos_1539) - 1644013..1646328 (+) 2316 WP_012159394.1 DNA translocase FtsK -
  CLOS_RS07925 (Clos_1540) mnmH 1646377..1647426 (+) 1050 WP_012159395.1 tRNA 2-selenouridine(34) synthase MnmH -
  CLOS_RS07930 (Clos_1541) pgsA 1647483..1648019 (+) 537 WP_012159396.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CLOS_RS07935 (Clos_1542) recA 1648151..1649209 (+) 1059 WP_012159397.1 recombinase RecA Machinery gene
  CLOS_RS07940 (Clos_1543) rny 1649598..1651112 (+) 1515 WP_041719124.1 ribonuclease Y -
  CLOS_RS07945 (Clos_1544) - 1651305..1651565 (+) 261 WP_012159399.1 stage V sporulation protein S -
  CLOS_RS07950 (Clos_1545) - 1651710..1652537 (+) 828 WP_012159400.1 PHP domain-containing protein -
  CLOS_RS07955 (Clos_1546) - 1652645..1653838 (+) 1194 WP_012159401.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 37945.19 Da        Isoelectric Point: 5.0761

>NTDB_id=29385 CLOS_RS07935 WP_012159397.1 1648151..1649209(+) (recA) [Alkaliphilus oremlandii OhILAs]
MEKKKALDMALSQIEKQFGKGSIMKLGEDAKLNLESVSTGSIGLDVALGIGGIPKGRIIEIYGPESSGKTTVSLHVIAET
QKRGGIAAFIDAEHALDPSYAKNLGVDIENLIVSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDSH
MGLQARLMSQALRKLAGSISKSNTIAIFINQLREKIGVMFGTPETTTGGRALKFYASVRLDVRKVDSIKQGNDVVGNRTR
VKVVKNKVAAPFKQAEFDIMYGEGISKAGDILDVAASLDIVTKSGAWYSYGEHRLGQGRENGKQFLKENPEISLEIENKI
REYYNLPIQSGTNTDLIQAKNDVPDATEENEE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=29385 CLOS_RS07935 WP_012159397.1 1648151..1649209(+) (recA) [Alkaliphilus oremlandii OhILAs]
ATGGAAAAGAAAAAAGCTTTGGACATGGCACTTAGTCAAATAGAGAAACAGTTCGGTAAAGGATCTATTATGAAGCTAGG
AGAGGATGCTAAGTTAAACCTGGAGAGTGTATCCACAGGCTCTATAGGCCTTGATGTCGCTTTAGGAATTGGTGGAATTC
CTAAAGGTAGAATTATTGAAATATATGGACCCGAATCTTCTGGTAAAACAACAGTATCACTTCATGTAATTGCGGAAACA
CAAAAAAGGGGAGGAATCGCTGCATTTATAGATGCAGAACATGCCCTTGACCCTTCATATGCTAAAAATCTAGGTGTTGA
TATAGAGAATCTTATTGTTTCACAACCGGATACCGGTGAACAAGCTCTTGAAATTGCAGAGGCTCTTGTAAGAAGCGGTG
CTGTTGATATTATCGTTGTGGACTCTGTTGCTGCATTGGTACCAAAGGCAGAAATAGAGGGAGAAATGGGAGATTCCCAC
ATGGGATTACAAGCTAGACTGATGTCACAGGCCTTAAGAAAACTAGCTGGCTCCATTAGTAAATCTAATACAATCGCTAT
TTTTATAAACCAGCTTCGAGAGAAAATAGGGGTAATGTTTGGTACACCAGAAACAACAACTGGTGGTCGTGCACTTAAAT
TCTATGCATCTGTACGTTTAGATGTAAGAAAAGTTGACTCTATCAAGCAAGGCAACGATGTCGTTGGAAACAGAACTAGA
GTAAAGGTTGTTAAAAATAAGGTTGCTGCTCCTTTTAAACAAGCTGAATTTGATATCATGTATGGTGAGGGAATTTCTAA
AGCCGGAGATATCTTAGATGTTGCAGCTAGTTTGGATATCGTTACTAAATCTGGTGCTTGGTATAGCTATGGTGAACATA
GGCTAGGGCAGGGACGTGAAAATGGTAAGCAGTTTTTAAAAGAAAACCCTGAAATTTCTTTAGAAATTGAAAATAAAATA
AGGGAATATTACAACCTTCCGATTCAATCTGGAACAAATACAGATCTAATCCAGGCTAAAAATGATGTTCCCGATGCAAC
AGAGGAAAATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8MFC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

75.077

92.33

0.693
  recA Streptococcus pneumoniae TIGR4

63.202

100

0.639
  recA Streptococcus pneumoniae R6

63.202

100

0.639
  recA Streptococcus pneumoniae D39

63.202

100

0.639
  recA Streptococcus pneumoniae Rx1

63.202

100

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

69.062

90.909

0.628
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.278

92.898

0.625
  recA Acinetobacter baumannii D1279779

66.163

94.034

0.622
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.006

98.295

0.619
  recA Vibrio cholerae strain A1552

63.006

98.295

0.619
  recA Neisseria gonorrhoeae MS11

67.913

91.193

0.619
  recA Neisseria gonorrhoeae MS11

67.913

91.193

0.619
  recA Neisseria gonorrhoeae strain FA1090

67.913

91.193

0.619
  recA Streptococcus mitis NCTC 12261

66.261

93.466

0.619
  recA Pseudomonas stutzeri DSM 10701

63.081

97.727

0.616
  recA Streptococcus mitis SK321

65.957

93.466

0.616
  recA Acinetobacter baylyi ADP1

67.188

90.909

0.611
  recA Ralstonia pseudosolanacearum GMI1000

68.371

88.92

0.608
  recA Helicobacter pylori 26695

66.46

91.477

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

65.846

92.33

0.608
  recA Glaesserella parasuis strain SC1401

66.562

90.909

0.605
  recA Helicobacter pylori strain NCTC11637

65.839

91.477

0.602
  recA Streptococcus mutans UA159

64.438

93.466

0.602
  recA Streptococcus pyogenes NZ131

64.815

92.045

0.597
  recA Lactococcus lactis subsp. cremoris KW2

63.526

93.466

0.594
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.062

90.909

0.582

Multiple sequence alignment