Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DF008_RS02680 | Genome accession | NZ_CP029566 |
| Coordinates | 579890..580936 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CBA7204 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 547758..628744 | 579890..580936 | within | 0 |
Gene organization within MGE regions
Location: 547758..628744
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DF008_RS02535 (DF008_02565) | acd | 547833..549656 (+) | 1824 | WP_003438294.1 | N-acetylglucosaminidase | - |
| DF008_RS02540 (DF008_02570) | - | 549871..554169 (+) | 4299 | WP_003438301.1 | PolC-type DNA polymerase III | - |
| DF008_RS02545 (DF008_02575) | rimP | 554373..554834 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| DF008_RS02550 (DF008_02580) | nusA | 554864..556018 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| DF008_RS02555 (DF008_02585) | rnpM | 556025..556306 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| DF008_RS02560 (DF008_02590) | - | 556296..556607 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| DF008_RS02565 (DF008_02595) | infB | 556629..558569 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| DF008_RS02570 (DF008_02600) | rbfA | 558612..558992 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| DF008_RS02575 (DF008_02605) | - | 558973..559650 (+) | 678 | Protein_504 | DHH family phosphoesterase | - |
| DF008_RS02585 (DF008_02615) | tnpB | 560299..561417 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| DF008_RS02590 (DF008_02620) | - | 561535..561840 (+) | 306 | Protein_506 | DHH family phosphoesterase | - |
| DF008_RS02595 (DF008_02625) | truB | 561853..562758 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| DF008_RS02600 (DF008_02630) | - | 562889..563818 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DF008_RS02610 (DF008_02640) | rpsO | 563922..564179 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| DF008_RS02615 (DF008_02645) | - | 564419..565264 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| DF008_RS02620 (DF008_02650) | pnp | 565389..567500 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| DF008_RS02625 (DF008_02655) | - | 567766..568509 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| DF008_RS02630 (DF008_02660) | - | 568667..569914 (+) | 1248 | WP_003438321.1 | M16 family metallopeptidase | - |
| DF008_RS02635 (DF008_02665) | - | 569949..570194 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| DF008_RS02640 (DF008_02670) | dapG | 570204..571427 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| DF008_RS02650 (DF008_02680) | tnpB | 572216..573334 (+) | 1119 | WP_159376146.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| DF008_RS02655 (DF008_02685) | - | 573521..574150 (+) | 630 | WP_021363436.1 | ClpP family protease | - |
| DF008_RS02660 (DF008_02690) | - | 574273..576684 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| DF008_RS02665 (DF008_02695) | mnmH | 576687..577745 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| DF008_RS02670 (DF008_02700) | rimO | 577739..579073 (+) | 1335 | WP_159376147.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| DF008_RS02675 (DF008_02705) | pgsA | 579060..579602 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DF008_RS02680 (DF008_02710) | recA | 579890..580936 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| DF008_RS02685 (DF008_02715) | rny | 581112..582653 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| DF008_RS02690 (DF008_02720) | - | 582967..585303 (+) | 2337 | WP_003438341.1 | diguanylate cyclase | - |
| DF008_RS02695 (DF008_02725) | - | 585685..587466 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| DF008_RS02700 (DF008_02730) | lepB | 587548..588078 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| DF008_RS02705 (DF008_02735) | - | 588118..588942 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| DF008_RS02710 (DF008_02740) | - | 589199..590107 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| DF008_RS02715 (DF008_02745) | purB | 590251..591696 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| DF008_RS02720 (DF008_02750) | - | 592007..592459 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DF008_RS02725 (DF008_02755) | - | 592794..593990 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| DF008_RS02730 (DF008_02760) | galT | 594375..595325 (+) | 951 | WP_070538166.1 | galactose-1-phosphate uridylyltransferase | - |
| DF008_RS02735 (DF008_02765) | - | 595486..596238 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| DF008_RS02740 (DF008_02770) | - | 596330..597106 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| DF008_RS02745 (DF008_02775) | - | 597421..599319 (+) | 1899 | WP_070538168.1 | glutamine synthetase | - |
| DF008_RS02750 (DF008_02780) | - | 599447..600568 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| DF008_RS02755 (DF008_02785) | - | 600767..601099 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| DF008_RS02760 (DF008_02790) | - | 601086..602144 (+) | 1059 | WP_003438377.1 | DUF1700 domain-containing protein | - |
| DF008_RS02765 (DF008_02795) | - | 602137..603207 (+) | 1071 | WP_011861183.1 | DUF4097 family beta strand repeat-containing protein | - |
| DF008_RS02770 (DF008_02800) | - | 603309..603845 (+) | 537 | WP_075052540.1 | hypothetical protein | - |
| DF008_RS02775 (DF008_02805) | - | 603961..604668 (+) | 708 | WP_016729592.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| DF008_RS02780 (DF008_02810) | - | 604670..605386 (+) | 717 | WP_016729591.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| DF008_RS02785 (DF008_02815) | - | 605388..606146 (+) | 759 | WP_159376148.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| DF008_RS02790 (DF008_02820) | - | 606281..607669 (+) | 1389 | WP_159376149.1 | two-component system sensor histidine kinase | - |
| DF008_RS02795 (DF008_02825) | - | 607745..608566 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| DF008_RS02800 (DF008_02830) | - | 608817..609971 (+) | 1155 | WP_009892989.1 | amidase domain-containing protein | - |
| DF008_RS02805 (DF008_02835) | - | 610154..610354 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| DF008_RS02810 (DF008_02840) | - | 610775..611203 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| DF008_RS02815 (DF008_02845) | - | 611346..612101 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| DF008_RS02825 (DF008_02855) | - | 612802..613308 (-) | 507 | WP_011861186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DF008_RS02830 (DF008_02860) | - | 613390..613710 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| DF008_RS02835 (DF008_02865) | - | 613879..614076 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| DF008_RS02840 (DF008_02870) | - | 614180..614620 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| DF008_RS02845 (DF008_02875) | - | 614869..615312 (+) | 444 | WP_159376150.1 | phage tail terminator family protein | - |
| DF008_RS02850 (DF008_02880) | - | 615317..616381 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| DF008_RS02855 (DF008_02885) | - | 616395..616823 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
| DF008_RS02860 (DF008_02890) | - | 616949..617395 (+) | 447 | WP_003419647.1 | phage tail assembly chaperone | - |
| DF008_RS02865 (DF008_02895) | - | 617422..617589 (+) | 168 | WP_003419648.1 | hypothetical protein | - |
| DF008_RS02870 (DF008_02900) | - | 617589..620042 (+) | 2454 | WP_159376151.1 | hypothetical protein | - |
| DF008_RS02875 (DF008_02905) | - | 620042..620464 (+) | 423 | WP_003428168.1 | phage baseplate protein | - |
| DF008_RS02880 (DF008_02910) | - | 620746..622275 (+) | 1530 | WP_009902435.1 | NlpC/P60 family protein | - |
| DF008_RS02885 (DF008_02915) | - | 622291..622617 (+) | 327 | WP_003438447.1 | DUF2577 domain-containing protein | - |
| DF008_RS02890 (DF008_02920) | - | 622617..623045 (+) | 429 | WP_003438449.1 | DUF2634 domain-containing protein | - |
| DF008_RS02895 (DF008_02925) | - | 623038..624090 (+) | 1053 | WP_003438450.1 | baseplate J/gp47 family protein | - |
| DF008_RS02900 (DF008_02930) | - | 624087..624785 (+) | 699 | WP_003428156.1 | putative phage tail protein | - |
| DF008_RS02905 (DF008_02935) | - | 624786..625769 (+) | 984 | WP_021366456.1 | phage tail protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=293667 DF008_RS02680 WP_003428218.1 579890..580936(+) (recA) [Clostridioides difficile strain CBA7204]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=293667 DF008_RS02680 WP_003428218.1 579890..580936(+) (recA) [Clostridioides difficile strain CBA7204]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACACGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.