Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCD74_RS05820 Genome accession   NZ_CP029556
Coordinates   1210541..1211578 (+) Length   345 a.a.
NCBI ID   WP_112926488.1    Uniprot ID   A0A344J5G5
Organism   Solilutibacter oculi strain 83-4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1205541..1216578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCD74_RS05800 (DCD74_05800) mutS 1206152..1208713 (-) 2562 WP_162615917.1 DNA mismatch repair protein MutS -
  DCD74_RS05805 (DCD74_05805) - 1208754..1209242 (+) 489 WP_112926485.1 CinA family protein -
  DCD74_RS05810 (DCD74_05810) - 1209276..1209650 (-) 375 WP_112926486.1 YchJ family protein -
  DCD74_RS05815 (DCD74_05815) lexA 1209705..1210364 (+) 660 WP_112926487.1 transcriptional repressor LexA -
  DCD74_RS05820 (DCD74_05820) recA 1210541..1211578 (+) 1038 WP_112926488.1 recombinase RecA Machinery gene
  DCD74_RS05825 (DCD74_05825) - 1211575..1212093 (+) 519 WP_112926489.1 regulatory protein RecX -
  DCD74_RS05830 (DCD74_05830) alaS 1212290..1214926 (+) 2637 WP_112926490.1 alanine--tRNA ligase -
  DCD74_RS05835 (DCD74_05835) csrA 1215045..1215251 (+) 207 WP_112926491.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37264.67 Da        Isoelectric Point: 4.8953

>NTDB_id=293484 DCD74_RS05820 WP_112926488.1 1210541..1211578(+) (recA) [Solilutibacter oculi strain 83-4]
MDENRKRALTAALSQIEKQFGKGSVMRMGDRAVEITETIGTGSLMLDLALGIGGLPKGRVVEIYGPESSGKTTLTLQAIA
ECQKTGGTAAFIDAEHALDPVYAAKLGVNVDDLLLSQPDTGEQALEIADMLVRSGAVDMVVVDSVAALTPKAEIEGEMGD
QLPGLQARLMSQALRKLTGNIKRSNCMVIFINQLRQKIGIMMPGQSNEVTTGGNALKFYASVRLDIRRIGAIKKGDEIIG
NQTRIKVVKNKLAPPFKQVITEILYGEGISREGELIEMGVNAKLVEKSGAWYGYDGERIGQGKENARQYLKDNPAAAAKL
ETQLREKFIPEEATRDEADGEDDEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=293484 DCD74_RS05820 WP_112926488.1 1210541..1211578(+) (recA) [Solilutibacter oculi strain 83-4]
ATGGACGAGAACCGCAAACGCGCGCTGACCGCAGCGCTCAGCCAGATCGAAAAGCAATTCGGCAAGGGATCGGTGATGCG
CATGGGTGACCGTGCGGTCGAGATCACCGAGACCATCGGCACCGGCTCGCTGATGCTCGATCTCGCGCTCGGCATCGGCG
GCCTGCCCAAGGGCCGCGTGGTCGAGATCTATGGACCGGAGTCCTCCGGCAAGACCACCCTGACCCTGCAGGCCATCGCG
GAATGCCAGAAGACCGGCGGCACCGCCGCCTTCATCGACGCCGAACACGCACTGGATCCGGTCTATGCCGCCAAGCTCGG
CGTGAACGTGGACGACCTGCTGCTCTCCCAGCCCGACACCGGCGAGCAGGCGCTGGAAATCGCCGACATGCTGGTGCGTT
CCGGCGCCGTCGACATGGTGGTGGTGGACTCGGTGGCCGCGCTGACGCCCAAGGCGGAAATCGAAGGCGAGATGGGCGAC
CAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCAGCAACTGCAT
GGTCATCTTCATCAACCAGCTGCGCCAGAAGATCGGCATCATGATGCCGGGCCAGAGCAATGAAGTGACCACCGGCGGCA
ACGCGCTCAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATCGGCGCGATCAAGAAGGGCGACGAGATCATCGGC
AACCAGACCCGCATCAAGGTGGTCAAGAACAAGCTGGCGCCTCCGTTCAAGCAGGTCATCACCGAAATCCTCTACGGCGA
AGGCATCTCGCGCGAGGGCGAACTGATCGAGATGGGCGTCAACGCCAAGCTGGTCGAGAAGTCCGGCGCCTGGTACGGCT
ACGACGGCGAACGCATCGGCCAGGGCAAGGAAAACGCCCGCCAGTACCTGAAGGACAACCCGGCCGCAGCCGCCAAGCTG
GAAACCCAGCTGCGCGAGAAGTTCATCCCCGAAGAGGCCACGCGTGACGAGGCCGACGGCGAAGACGACGAGGCATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344J5G5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

70.958

96.812

0.687
  recA Acinetobacter baylyi ADP1

68.314

99.71

0.681
  recA Vibrio cholerae strain A1552

70.783

96.232

0.681
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.783

96.232

0.681
  recA Acinetobacter baumannii D1279779

70.213

95.362

0.67
  recA Ralstonia pseudosolanacearum GMI1000

73.482

90.725

0.667
  recA Neisseria gonorrhoeae MS11

65.429

100

0.664
  recA Neisseria gonorrhoeae MS11

65.429

100

0.664
  recA Neisseria gonorrhoeae strain FA1090

65.429

100

0.664
  recA Glaesserella parasuis strain SC1401

65.217

100

0.652
  recA Latilactobacillus sakei subsp. sakei 23K

60.526

99.13

0.6
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.375

92.754

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.562

96.522

0.594
  recA Bacillus subtilis subsp. subtilis str. 168

63.077

94.203

0.594
  recA Streptococcus mutans UA159

58.046

100

0.586
  recA Helicobacter pylori strain NCTC11637

61.28

95.072

0.583
  recA Helicobacter pylori 26695

60.976

95.072

0.58
  recA Streptococcus mitis SK321

60.061

95.072

0.571
  recA Streptococcus pyogenes NZ131

59.394

95.652

0.568
  recA Streptococcus pneumoniae Rx1

59.756

95.072

0.568
  recA Streptococcus pneumoniae R6

59.756

95.072

0.568
  recA Streptococcus pneumoniae TIGR4

59.756

95.072

0.568
  recA Streptococcus pneumoniae D39

59.756

95.072

0.568
  recA Streptococcus mitis NCTC 12261

59.756

95.072

0.568
  recA Lactococcus lactis subsp. cremoris KW2

58.462

94.203

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

57.012

95.072

0.542

Multiple sequence alignment