Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DK843_RS05240 Genome accession   NZ_CP029554
Coordinates   1116822..1117874 (+) Length   350 a.a.
NCBI ID   WP_076225772.1    Uniprot ID   A0A344UES4
Organism   Chromobacterium phragmitis strain IIBBL 274-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1111822..1122874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK843_RS05220 (DK843_05220) - 1112200..1112538 (-) 339 WP_114063485.1 YbaB/EbfC family nucleoid-associated protein -
  DK843_RS05225 (DK843_05225) dnaX 1112544..1114481 (-) 1938 WP_114072725.1 DNA polymerase III subunit gamma/tau -
  DK843_RS05230 (DK843_05230) mltB 1114565..1115605 (-) 1041 WP_114072726.1 lytic murein transglycosylase B -
  DK843_RS05235 (DK843_05235) hrcA 1115641..1116660 (-) 1020 WP_232538560.1 heat-inducible transcriptional repressor HrcA -
  DK843_RS05240 (DK843_05240) recA 1116822..1117874 (+) 1053 WP_076225772.1 recombinase RecA Machinery gene
  DK843_RS05245 (DK843_05245) recX 1117874..1118329 (+) 456 WP_114072727.1 recombination regulator RecX -
  DK843_RS05250 (DK843_05250) - 1118333..1118794 (+) 462 WP_114063487.1 SRPBCC domain-containing protein -
  DK843_RS05255 (DK843_05255) alaS 1118858..1121491 (+) 2634 WP_114072728.1 alanine--tRNA ligase -
  DK843_RS05260 (DK843_05260) - 1121603..1122085 (+) 483 WP_145964297.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 350 a.a.        Molecular weight: 37727.00 Da        Isoelectric Point: 4.8780

>NTDB_id=293455 DK843_RS05240 WP_076225772.1 1116822..1117874(+) (recA) [Chromobacterium phragmitis strain IIBBL 274-1]
MASEDKSKALAAALAQIEKQFGKGSIMRMSDNQITENLQVISTGSLSLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQV
VAEAQKLGGTCAYIDAENALDPVYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVVDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTGNIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGGIKKGEEVVG
NDTRVKVVKNKVSPPFRQADFEILYGEGISRPGEIIELGVKHGFIDKSGAWYAYNGQKIGQGKDNTREWLKANPAIADEV
ERKIREAVGVKVEINEAQGDEEFADDAFDA

Nucleotide


Download         Length: 1053 bp        

>NTDB_id=293455 DK843_RS05240 WP_076225772.1 1116822..1117874(+) (recA) [Chromobacterium phragmitis strain IIBBL 274-1]
ATGGCTTCCGAAGACAAGAGCAAAGCGCTGGCCGCAGCCCTCGCCCAGATTGAAAAGCAGTTCGGCAAGGGCTCGATCAT
GCGCATGAGCGACAACCAGATCACCGAAAACCTGCAAGTGATCTCCACCGGCTCGCTGAGCCTGGACCTGGCGCTGGGCG
TCGGCGGCCTGCCGCGCGGCCGCGTGGTCGAAATCTACGGCCCGGAATCGTCCGGCAAGACCACCCTGTGTCTGCAGGTG
GTGGCCGAGGCGCAAAAACTGGGCGGCACCTGCGCCTACATCGACGCCGAAAACGCGCTGGACCCGGTCTACGCGCAAAA
GCTGGGCGTCAACGTGGAAGACCTGCTGATCTCGCAGCCTGACACCGGCGAACAGGCGCTGGAAATCTGCGACATGCTGG
TGCGCTCCAGCGGCGTGGACGTGATCGTGGTCGATTCCGTCGCCGCCCTGGTGCCGAAAGCGGAAATCGAAGGCGAGATG
GGCGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTGACCGGCAACATCAAGCGCACCAA
CACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCA
ACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACCGGCGGCATCAAGAAGGGCGAGGAGGTGGTCGGC
AACGACACCCGCGTCAAAGTGGTGAAGAACAAGGTGTCCCCGCCGTTCCGCCAGGCCGATTTCGAAATCCTATACGGCGA
AGGCATCTCCCGTCCGGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATCGACAAGTCCGGCGCCTGGTACGCCT
ACAACGGCCAGAAAATCGGCCAGGGCAAGGACAACACCCGCGAATGGCTGAAGGCCAACCCGGCCATCGCCGACGAGGTC
GAGCGCAAGATCCGCGAAGCGGTGGGCGTGAAGGTCGAAATCAACGAAGCCCAGGGCGACGAAGAGTTCGCCGACGACGC
CTTCGACGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A344UES4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

77.876

96.857

0.754
  recA Neisseria gonorrhoeae strain FA1090

77.876

96.857

0.754
  recA Neisseria gonorrhoeae MS11

77.876

96.857

0.754
  recA Ralstonia pseudosolanacearum GMI1000

78.344

89.714

0.703
  recA Pseudomonas stutzeri DSM 10701

75.776

92

0.697
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.923

92.857

0.677
  recA Vibrio cholerae strain A1552

72.923

92.857

0.677
  recA Glaesserella parasuis strain SC1401

72.171

93.429

0.674
  recA Acinetobacter baylyi ADP1

67.16

96.571

0.649
  recA Acinetobacter baumannii D1279779

69.04

92.286

0.637
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.429

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.242

96.857

0.603
  recA Helicobacter pylori 26695

63.253

94.857

0.6
  recA Helicobacter pylori strain NCTC11637

63.253

94.857

0.6
  recA Bacillus subtilis subsp. subtilis str. 168

63.497

93.143

0.591
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

94.286

0.591
  recA Streptococcus mitis NCTC 12261

58.309

98

0.571
  recA Streptococcus mutans UA159

59.226

96

0.569
  recA Streptococcus pneumoniae D39

59.091

94.286

0.557
  recA Streptococcus pneumoniae R6

59.091

94.286

0.557
  recA Streptococcus pneumoniae Rx1

59.091

94.286

0.557
  recA Streptococcus pneumoniae TIGR4

59.091

94.286

0.557
  recA Lactococcus lactis subsp. cremoris KW2

59.091

94.286

0.557
  recA Streptococcus pyogenes NZ131

58.788

94.286

0.554
  recA Streptococcus mitis SK321

58.485

94.286

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.232

93.714

0.546

Multiple sequence alignment