Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RMA_RS10245 Genome accession   NC_009900
Coordinates   461739..462083 (-) Length   114 a.a.
NCBI ID   WP_337998655.1    Uniprot ID   -
Organism   Rickettsia massiliae MTU5     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 456739..467083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RMA_RS09805 (RMA_0461) - 457159..457536 (+) 378 WP_187145922.1 hypothetical protein -
  RMA_RS02465 (RMA_0462) gltX 457619..458962 (-) 1344 WP_012152658.1 glutamate--tRNA ligase -
  RMA_RS02470 (RMA_0463) topA 459071..461401 (-) 2331 WP_012152659.1 type I DNA topoisomerase -
  RMA_RS02475 (RMA_0464) - 461402..461734 (-) 333 WP_202964939.1 DNA processing protein DprA -
  RMA_RS10245 (RMA_0465) dprA 461739..462083 (-) 345 WP_337998655.1 DNA-processing protein DprA Machinery gene
  RMA_RS08185 (RMA_0466) - 462076..462294 (-) 219 WP_081427917.1 DNA-processing protein DprA -
  RMA_RS02480 (RMA_0467) - 462240..462563 (-) 324 WP_041404610.1 hypothetical protein -
  RMA_RS02485 (RMA_0468) - 462695..463297 (-) 603 WP_041404966.1 peroxiredoxin -
  RMA_RS02490 (RMA_0469) - 463379..464314 (-) 936 WP_014365972.1 SPFH domain-containing protein -
  RMA_RS02495 - 464387..464620 (-) 234 WP_041404611.1 hypothetical protein -
  RMA_RS02500 (RMA_0470) - 464687..466255 (-) 1569 WP_012152662.1 phosphoethanolamine transferase -
  RMA_RS02505 (RMA_0471) ruvX 466291..466755 (+) 465 WP_041404612.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12394.28 Da        Isoelectric Point: 6.2206

>NTDB_id=29345 RMA_RS10245 WP_337998655.1 461739..462083(-) (dprA) [Rickettsia massiliae MTU5]
MDSSVHQAAISQTIGVIADGIDHIYPPENKKLFENLAEEGLILAELPIGSTPLGKHFPQRNRIISGLALEVVVVEASLKS
GSLITAKFALEQNREIFAVPGFPLDPRCQGTRYK

Nucleotide


Download         Length: 345 bp        

>NTDB_id=29345 RMA_RS10245 WP_337998655.1 461739..462083(-) (dprA) [Rickettsia massiliae MTU5]
ATAGATAGCAGCGTACATCAAGCTGCAATTTCTCAAACTATCGGAGTTATTGCAGACGGTATTGATCATATATATCCACC
GGAAAATAAAAAACTATTTGAAAATTTAGCAGAAGAAGGTTTAATATTAGCTGAGTTACCTATCGGCTCTACCCCGCTTG
GAAAACATTTTCCACAGCGTAATAGGATAATATCGGGACTAGCCTTAGAAGTAGTGGTAGTAGAAGCAAGTTTAAAATCC
GGTTCATTAATAACTGCAAAATTTGCACTTGAACAAAATAGGGAAATATTTGCCGTTCCTGGCTTTCCTTTAGATCCAAG
ATGTCAAGGTACAAGGTACAAATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(2-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

52.212

99.123

0.518
  dprA Lactococcus lactis subsp. cremoris KW2

50

100

0.509
  dprA Acinetobacter baumannii D1279779

51.327

99.123

0.509
  dprA Legionella pneumophila strain ERS1305867

49.138

100

0.5
  dprA Neisseria meningitidis MC58

49.558

99.123

0.491
  dprA Neisseria gonorrhoeae MS11

49.558

99.123

0.491
  dprA Neisseria meningitidis strain C311

49.558

99.123

0.491
  dprA Acinetobacter baumannii strain A118

53.846

91.228

0.491
  dprA Neisseria gonorrhoeae strain FA1090

48.673

99.123

0.482
  dprA Haemophilus influenzae Rd KW20

46.491

100

0.465
  dprA Acinetobacter baylyi ADP1

45.217

100

0.456
  dprA/cilB/dalA Streptococcus pneumoniae R6

43.966

100

0.447
  dprA/cilB/dalA Streptococcus mitis SK321

43.966

100

0.447
  dprA Streptococcus mutans UA159

43.966

100

0.447
  dprA/cilB/dalA Streptococcus pneumoniae Rx1

43.966

100

0.447
  dprA/cilB/dalA Streptococcus pneumoniae D39

43.966

100

0.447
  dprA/cilB/dalA Streptococcus pneumoniae TIGR4

43.966

100

0.447
  dprA/cilB/dalA Streptococcus mitis NCTC 12261

43.966

100

0.447
  dprA Vibrio cholerae strain A1552

44.737

100

0.447
  dprA Glaesserella parasuis strain SC1401

44.737

100

0.447
  dprA Thermus thermophilus HB27

44.737

100

0.447
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.02

89.474

0.439
  dprA Vibrio campbellii strain DS40M4

44.248

99.123

0.439
  dprA Staphylococcus aureus N315

42.982

100

0.43
  dprA Staphylococcus aureus MW2

42.982

100

0.43
  dprA Latilactobacillus sakei subsp. sakei 23K

45.631

90.351

0.412
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

37.931

100

0.386

Multiple sequence alignment