Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DKK66_RS13725 Genome accession   NZ_CP029539
Coordinates   2973657..2974703 (-) Length   348 a.a.
NCBI ID   WP_045846081.1    Uniprot ID   -
Organism   Aquitalea sp. USM4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2968657..2979703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKK66_RS13710 (DKK66_13695) - 2969577..2970317 (-) 741 WP_131359029.1 ABC transporter substrate-binding protein -
  DKK66_RS13715 (DKK66_13700) alaS 2970414..2973047 (-) 2634 WP_131359040.1 alanine--tRNA ligase -
  DKK66_RS13720 (DKK66_13705) recX 2973183..2973641 (-) 459 WP_062789400.1 recombination regulator RecX -
  DKK66_RS13725 (DKK66_13710) recA 2973657..2974703 (-) 1047 WP_045846081.1 recombinase RecA Machinery gene
  DKK66_RS13730 (DKK66_13715) hrcA 2974864..2975880 (+) 1017 WP_045846080.1 heat-inducible transcriptional repressor HrcA -
  DKK66_RS13735 (DKK66_13720) mltB 2975912..2976955 (+) 1044 WP_131359044.1 lytic murein transglycosylase B -
  DKK66_RS13740 (DKK66_13725) dnaX 2977031..2978983 (+) 1953 WP_131359047.1 DNA polymerase III subunit gamma/tau -
  DKK66_RS13745 (DKK66_13730) - 2978985..2979323 (+) 339 WP_045846077.1 YbaB/EbfC family nucleoid-associated protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37572.92 Da        Isoelectric Point: 4.8055

>NTDB_id=293364 DKK66_RS13725 WP_045846081.1 2973657..2974703(-) (recA) [Aquitalea sp. USM4]
MASEDKSRALAAALAQIEKQFGKGSIMRMSDNQINENLQVVSTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLCLQA
VAEAQKLGGTCAYIDAENALDPIYAQKLGVNVEDLLISQPDTGEQALEICDMLVRSSGVDVIVIDSVAALVPKAEIEGEM
GDSHVGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRVGGIKKGDEVIG
NETRVKVVKNKVSPPFRQADFDILYGEGISREGEIIELGVKHGFIEKSGAWYAYNGQKIGQGKDNTREWLKSNPAIAQEI
EGKIREAVGIKVEITENDEELADDVLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=293364 DKK66_RS13725 WP_045846081.1 2973657..2974703(-) (recA) [Aquitalea sp. USM4]
ATGGCGTCAGAAGACAAGAGCCGCGCATTGGCGGCAGCCCTTGCCCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCAT
GCGGATGAGCGACAACCAGATCAACGAAAACCTGCAAGTGGTATCCACCGGTTCGCTGGGCCTGGACCTGGCACTGGGTG
TTGGCGGTCTGCCGCGCGGCCGTGTCGTGGAAATCTACGGCCCGGAATCTTCCGGTAAAACCACCCTGTGTCTGCAGGCC
GTGGCCGAAGCCCAGAAACTGGGTGGCACCTGCGCCTACATCGACGCAGAAAACGCACTGGACCCGATCTACGCCCAGAA
ACTGGGTGTCAACGTGGAAGACCTGCTGATTTCCCAGCCGGACACCGGCGAACAGGCGCTGGAAATCTGCGACATGCTGG
TGCGTTCCAGCGGTGTTGACGTCATCGTGATCGACTCGGTGGCCGCACTGGTACCCAAGGCCGAAATCGAAGGCGAAATG
GGTGACAGCCACGTCGGCCTGCAAGCCCGCCTGATGAGCCAGGCACTGCGCAAGCTGACCGCCAACATCAAGCGCACCAA
TACCCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGTA
ATGCACTGAAGTTCTATGCCTCCGTGCGTCTGGACATCCGTCGCGTCGGCGGCATCAAGAAGGGTGACGAGGTGATCGGT
AACGAAACCCGCGTCAAGGTAGTGAAGAACAAGGTATCGCCGCCGTTCCGTCAGGCCGATTTCGACATCCTGTACGGTGA
AGGCATCAGCCGCGAAGGCGAAATCATCGAGCTGGGCGTCAAGCACGGCTTCATTGAAAAATCCGGTGCCTGGTATGCCT
ACAACGGCCAGAAGATCGGCCAGGGCAAGGACAACACCCGTGAATGGCTGAAGTCCAACCCGGCCATCGCGCAGGAAATC
GAAGGCAAGATCCGCGAAGCCGTCGGCATCAAGGTGGAAATCACCGAGAACGACGAAGAGCTGGCTGACGACGTACTGGA
CGTATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

76.54

97.989

0.75
  recA Neisseria gonorrhoeae MS11

76.54

97.989

0.75
  recA Neisseria gonorrhoeae strain FA1090

76.54

97.989

0.75
  recA Ralstonia pseudosolanacearum GMI1000

79.936

90.23

0.721
  recA Pseudomonas stutzeri DSM 10701

72.886

98.563

0.718
  recA Glaesserella parasuis strain SC1401

72.923

93.391

0.681
  recA Vibrio cholerae strain A1552

71.517

92.816

0.664
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.517

92.816

0.664
  recA Acinetobacter baumannii D1279779

65.994

99.713

0.658
  recA Acinetobacter baylyi ADP1

69.969

92.816

0.649
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.537

97.414

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.473

95.977

0.609
  recA Latilactobacillus sakei subsp. sakei 23K

61.337

98.851

0.606
  recA Helicobacter pylori strain NCTC11637

62.651

95.402

0.598
  recA Helicobacter pylori 26695

62.651

95.402

0.598
  recA Bacillus subtilis subsp. subtilis str. 168

63.804

93.678

0.598
  recA Streptococcus mutans UA159

58.944

97.989

0.578
  recA Streptococcus pneumoniae Rx1

57.803

99.425

0.575
  recA Streptococcus pneumoniae TIGR4

57.803

99.425

0.575
  recA Streptococcus pneumoniae R6

57.803

99.425

0.575
  recA Streptococcus pneumoniae D39

57.803

99.425

0.575
  recA Streptococcus mitis SK321

57.184

100

0.572
  recA Lactococcus lactis subsp. cremoris KW2

60.303

94.828

0.572
  recA Streptococcus mitis NCTC 12261

59.091

94.828

0.56
  recA Streptococcus pyogenes NZ131

58.788

94.828

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.104

93.966

0.546

Multiple sequence alignment