Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SALB1_RS01390 Genome accession   NZ_CP029488
Coordinates   321288..322409 (-) Length   373 a.a.
NCBI ID   WP_109992225.1    Uniprot ID   A0A2Z3IZ23
Organism   Salinisphaera sp. LB1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 316288..327409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALB1_RS01375 (SALB1_0286) alaS 317065..319692 (-) 2628 WP_109992222.1 alanine--tRNA ligase -
  SALB1_RS01380 (SALB1_0287) - 319799..320098 (-) 300 WP_109992223.1 MTH1187 family thiamine-binding protein -
  SALB1_RS01385 (SALB1_0288) - 320735..321220 (-) 486 WP_109992224.1 regulatory protein RecX -
  SALB1_RS01390 (SALB1_0289) recA 321288..322409 (-) 1122 WP_109992225.1 recombinase RecA Machinery gene
  SALB1_RS01395 (SALB1_0290) thpR 322488..323030 (-) 543 WP_158590574.1 RNA 2',3'-cyclic phosphodiesterase -
  SALB1_RS01400 (SALB1_0291) - 323044..323556 (-) 513 WP_109992227.1 CinA family protein -
  SALB1_RS01405 (SALB1_0292) mutS 323650..326244 (+) 2595 WP_109992228.1 DNA mismatch repair protein MutS -
  SALB1_RS01410 (SALB1_0293) - 326517..327008 (-) 492 WP_109992229.1 DUF2505 domain-containing protein -

Sequence

Protein


Download         Length: 373 a.a.        Molecular weight: 39589.87 Da        Isoelectric Point: 5.6304

>NTDB_id=293120 SALB1_RS01390 WP_109992225.1 321288..322409(-) (recA) [Salinisphaera sp. LB1]
MDEDRKKALAAALSQIERQFGKGSVMRMGDVDNSNVASISSGSLTLDIALGVGGYPRGRVVEIYGPESSGKTTLTLQAIA
EAQKAGGTAAFIDAEHALDPTYAEALGVDIENLLISQPDTGEQALEIADMLVRSAAVDIVVVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKRTGTTVMFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSIKKGDEVIGNE
TRVKVVKNKMAPPFRKAEFEILYGEGSSREGEIIDLGVANNLVEKAGSWYSYNGDRIGQGKDNARKFLKDNPEIAQTIEA
ALREKLLPKKKTKEEKAAEAAAANGADQAGEADLLSSENSATAASGASKRGAK

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=293120 SALB1_RS01390 WP_109992225.1 321288..322409(-) (recA) [Salinisphaera sp. LB1]
ATGGATGAAGATCGCAAGAAAGCACTCGCCGCCGCGCTGAGCCAGATCGAACGCCAGTTCGGCAAGGGCTCGGTGATGCG
CATGGGCGATGTCGACAACTCCAACGTCGCCTCGATTTCCAGTGGCTCGCTGACGCTCGACATCGCGCTCGGCGTCGGTG
GCTACCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCGGAATCCTCGGGCAAGACCACGCTCACGCTGCAGGCCATCGCC
GAGGCGCAGAAGGCCGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTGGACCCGACCTATGCCGAAGCCCTCGG
TGTGGATATCGAGAACCTGCTGATCTCGCAGCCGGACACCGGCGAGCAGGCGCTCGAGATCGCGGACATGCTGGTGCGTT
CGGCGGCGGTCGATATCGTGGTGGTGGACTCGGTCGCCGCGCTCACGCCCAAGGCCGAGATCGAGGGCGAGATGGGCGAT
TCGCATGTCGGCCTGCAGGCGCGGCTGATGAGCCAGGCACTGCGCAAGCTGACCGCCAACATCAAGCGCACCGGCACCAC
GGTGATGTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACGCGC
TGAAGTTCTATTCGTCCGTGCGGCTCGACATCCGCCGCATCGGTTCGATCAAGAAGGGCGACGAAGTCATCGGCAACGAG
ACCCGCGTCAAGGTGGTCAAGAACAAGATGGCGCCGCCGTTCCGCAAGGCCGAGTTCGAGATCCTCTACGGCGAGGGCTC
CTCGCGCGAAGGCGAGATCATCGATCTGGGCGTGGCCAACAACCTGGTGGAAAAAGCCGGCTCCTGGTATTCCTACAACG
GCGACCGCATCGGCCAGGGCAAGGACAACGCCCGCAAGTTCCTCAAGGACAACCCCGAAATCGCGCAGACCATCGAAGCA
GCCCTGCGCGAGAAGCTGTTGCCGAAGAAAAAGACGAAGGAAGAGAAGGCAGCCGAAGCAGCCGCGGCGAATGGCGCGGA
TCAGGCCGGCGAAGCGGATCTGTTGTCTTCGGAAAACAGCGCCACTGCGGCCTCGGGCGCGTCCAAACGCGGCGCGAAAT
AG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3IZ23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

70.308

95.71

0.673
  recA Pseudomonas stutzeri DSM 10701

74.618

87.668

0.654
  recA Ralstonia pseudosolanacearum GMI1000

76.849

83.378

0.641
  recA Neisseria gonorrhoeae MS11

73.148

86.863

0.635
  recA Neisseria gonorrhoeae MS11

73.148

86.863

0.635
  recA Neisseria gonorrhoeae strain FA1090

73.148

86.863

0.635
  recA Vibrio cholerae strain A1552

72.171

87.668

0.633
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.171

87.668

0.633
  recA Acinetobacter baumannii D1279779

72.171

87.668

0.633
  recA Glaesserella parasuis strain SC1401

69.753

86.863

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.164

89.812

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

67.601

86.059

0.582
  recA Streptococcus mutans UA159

61.808

91.957

0.568
  recA Streptococcus mitis NCTC 12261

58.824

95.71

0.563
  recA Streptococcus mitis SK321

58.263

95.71

0.558
  recA Latilactobacillus sakei subsp. sakei 23K

64.486

86.059

0.555
  recA Helicobacter pylori 26695

62.691

87.668

0.55
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.691

87.668

0.55
  recA Helicobacter pylori strain NCTC11637

62.08

87.668

0.544
  recA Streptococcus pneumoniae TIGR4

61.774

87.668

0.542
  recA Streptococcus pneumoniae Rx1

61.774

87.668

0.542
  recA Streptococcus pneumoniae D39

61.774

87.668

0.542
  recA Streptococcus pneumoniae R6

61.774

87.668

0.542
  recA Streptococcus pyogenes NZ131

61.585

87.936

0.542
  recA Lactococcus lactis subsp. cremoris KW2

59.568

86.863

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.568

84.987

0.515

Multiple sequence alignment