Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DJ564_RS07070 | Genome accession | NZ_CP029482 |
| Coordinates | 1540546..1541598 (+) | Length | 350 a.a. |
| NCBI ID | WP_007907270.1 | Uniprot ID | - |
| Organism | Pseudomonas sp. 31-12 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1519133..1547516 | 1540546..1541598 | within | 0 |
Gene organization within MGE regions
Location: 1519133..1547516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DJ564_RS06940 (DJ564_06940) | - | 1519133..1519990 (+) | 858 | WP_109628226.1 | peptidoglycan DD-metalloendopeptidase family protein | - |
| DJ564_RS06945 (DJ564_06945) | rpoS | 1520096..1521103 (+) | 1008 | WP_046816537.1 | RNA polymerase sigma factor RpoS | - |
| DJ564_RS06950 (DJ564_06950) | fdxA | 1521577..1521900 (-) | 324 | WP_109628227.1 | ferredoxin FdxA | - |
| DJ564_RS06955 (DJ564_06955) | mutS | 1522042..1524609 (-) | 2568 | WP_178082340.1 | DNA mismatch repair protein MutS | - |
| DJ564_RS06960 (DJ564_06960) | - | 1524822..1525556 (+) | 735 | WP_109635963.1 | XRE family transcriptional regulator | - |
| DJ564_RS06965 (DJ564_06965) | - | 1526053..1526400 (+) | 348 | WP_109628229.1 | phage holin family protein | - |
| DJ564_RS06970 (DJ564_06970) | - | 1526533..1527117 (+) | 585 | WP_109628230.1 | hypothetical protein | - |
| DJ564_RS06975 (DJ564_06975) | - | 1527114..1527296 (+) | 183 | WP_010462758.1 | DUF2635 domain-containing protein | - |
| DJ564_RS06980 (DJ564_06980) | - | 1527296..1528792 (+) | 1497 | WP_109628231.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| DJ564_RS06985 (DJ564_06985) | - | 1528873..1529220 (+) | 348 | WP_109628232.1 | phage tail tube protein | - |
| DJ564_RS06990 (DJ564_06990) | - | 1529217..1529513 (+) | 297 | WP_109628233.1 | phage tail assembly protein | - |
| DJ564_RS06995 (DJ564_06995) | - | 1529644..1531329 (+) | 1686 | WP_109628234.1 | phage tail protein | - |
| DJ564_RS07000 (DJ564_07000) | - | 1531316..1532551 (+) | 1236 | WP_109628235.1 | DNA circularization protein | - |
| DJ564_RS07005 (DJ564_07005) | - | 1532554..1533597 (+) | 1044 | WP_109628236.1 | phage baseplate assembly protein | - |
| DJ564_RS07015 (DJ564_07015) | - | 1533779..1534288 (+) | 510 | WP_109628238.1 | phage baseplate assembly protein V | - |
| DJ564_RS07020 (DJ564_07020) | - | 1534288..1534686 (+) | 399 | WP_010462743.1 | phage GP46 family protein | - |
| DJ564_RS07025 (DJ564_07025) | - | 1534676..1535716 (+) | 1041 | WP_109628239.1 | baseplate J/gp47 family protein | - |
| DJ564_RS07030 (DJ564_07030) | - | 1535707..1536306 (+) | 600 | WP_109628240.1 | YmfQ family protein | - |
| DJ564_RS32320 | - | 1536318..1537283 (+) | 966 | WP_256597478.1 | hypothetical protein | - |
| DJ564_RS07040 (DJ564_07040) | - | 1537297..1537518 (+) | 222 | WP_109628241.1 | hypothetical protein | - |
| DJ564_RS32770 | - | 1537562..1538188 (+) | 627 | WP_371922058.1 | hypothetical protein | - |
| DJ564_RS07050 (DJ564_07050) | - | 1538195..1538677 (+) | 483 | WP_109628242.1 | phage tail assembly chaperone | - |
| DJ564_RS07055 (DJ564_07055) | - | 1538800..1539363 (+) | 564 | WP_109628243.1 | glycoside hydrolase family 19 protein | - |
| DJ564_RS07060 (DJ564_07060) | - | 1539345..1539881 (+) | 537 | WP_109628244.1 | lysis system i-spanin subunit Rz | - |
| DJ564_RS07065 (DJ564_07065) | - | 1539962..1540462 (+) | 501 | WP_109635965.1 | CinA family protein | - |
| DJ564_RS07070 (DJ564_07070) | recA | 1540546..1541598 (+) | 1053 | WP_007907270.1 | recombinase RecA | Machinery gene |
| DJ564_RS07075 (DJ564_07075) | recX | 1541607..1542074 (+) | 468 | WP_109628245.1 | recombination regulator RecX | - |
| DJ564_RS07080 (DJ564_07080) | - | 1542131..1543249 (-) | 1119 | WP_109628246.1 | TIGR00730 family Rossman fold protein | - |
| DJ564_RS07085 (DJ564_07085) | - | 1543727..1543921 (+) | 195 | WP_109628247.1 | hypothetical protein | - |
| DJ564_RS07090 (DJ564_07090) | - | 1543922..1544347 (-) | 426 | WP_109628248.1 | PA3611 family quorum-sensing-regulated virulence factor | - |
| DJ564_RS07095 (DJ564_07095) | - | 1544537..1545295 (+) | 759 | WP_109628249.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| DJ564_RS07100 (DJ564_07100) | erdR | 1545505..1546155 (+) | 651 | WP_010462704.1 | response regulator transcription factor ErdR | - |
| DJ564_RS07105 (DJ564_07105) | - | 1546231..1546593 (+) | 363 | WP_008010143.1 | diacylglycerol kinase | - |
| DJ564_RS07110 (DJ564_07110) | - | 1546590..1547516 (-) | 927 | WP_109628250.1 | LysR family transcriptional regulator | - |
Sequence
Protein
Download Length: 350 a.a. Molecular weight: 37269.83 Da Isoelectric Point: 5.5328
>NTDB_id=293081 DJ564_RS07070 WP_007907270.1 1540546..1541598(+) (recA) [Pseudomonas sp. 31-12]
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
MDDNKKKALAAALGQIERQFGKGAVMRMGDQDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKAGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAVDVIIVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVASPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYEGTKIGQGKANSAKFLADNPEIAAKLEK
QLRDKLLTPAPDVKASPVKETADDLADADI
Nucleotide
Download Length: 1053 bp
>NTDB_id=293081 DJ564_RS07070 WP_007907270.1 1540546..1541598(+) (recA) [Pseudomonas sp. 31-12]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCGAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACTTTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCTGAACACGCCCTCGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAAGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACTTGGGCGTGCTGCACGGTTTTGTTGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCAGGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGACATCGCGCTCGGCATTGGCG
GCCTGCCGAAAGGCCGTATCGTTGAAATCTACGGTCCTGAATCCTCCGGTAAAACCACGCTGACTTTGTCGGTGATCGCC
CAGGCTCAAAAAGCCGGCGCGACCTGCGCATTCGTCGACGCTGAACACGCCCTCGACCCTGAATACGCCGGCAAACTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCGGACACCGGCGAGCAGGCCCTGGAAATCACCGACATGCTGGTGCGTT
CCAACGCCGTTGACGTGATCATCGTCGACTCCGTGGCCGCGCTGGTTCCGAAGGCTGAAATCGAAGGCGAGATGGGTGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAAGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGCATGAAAATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGACATCCGTCGTACTGGCGCGGTGAAAGAAGGTGATGAAGTCGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTCAAGAACAAGGTGGCTTCGCCGTTCCGTCAGGCCGAGTTCCAGATTCTTTACGGCAAGGGCAT
CTACCTCAACGGCGAGATGATCGACTTGGGCGTGCTGCACGGTTTTGTTGAGAAGTCCGGTGCCTGGTATGCCTATGAAG
GCACCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAATCCGGAAATCGCCGCCAAGCTCGAGAAG
CAACTGCGTGACAAGCTGCTGACCCCGGCGCCGGACGTCAAAGCATCGCCAGTCAAAGAGACGGCTGATGACCTGGCTGA
CGCTGATATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.