Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DKL56_RS02580 Genome accession   NZ_CP029476
Coordinates   515171..516283 (+) Length   370 a.a.
NCBI ID   WP_109715294.1    Uniprot ID   -
Organism   Lactobacillus apis strain ESL0185     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 510171..521283
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKL56_RS02555 (DKL56_02555) pgsA 510895..511455 (+) 561 WP_109715291.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DKL56_RS02560 (DKL56_02560) - 511610..512785 (+) 1176 WP_109715292.1 ABC transporter ATP-binding protein -
  DKL56_RS02565 (DKL56_02565) - 512787..513410 (+) 624 WP_109715293.1 ABC transporter permease -
  DKL56_RS02570 (DKL56_02570) - 513424..514359 (+) 936 WP_046306464.1 osmoprotectant ABC transporter substrate-binding protein -
  DKL56_RS02575 (DKL56_02575) - 514359..515018 (+) 660 WP_046306465.1 ABC transporter permease -
  DKL56_RS02580 (DKL56_02580) recA 515171..516283 (+) 1113 WP_109715294.1 recombinase RecA Machinery gene
  DKL56_RS02585 (DKL56_02585) rny 516413..518044 (+) 1632 WP_109715295.1 ribonuclease Y -
  DKL56_RS02590 (DKL56_02590) - 518156..519313 (+) 1158 WP_109715296.1 glycosyltransferase family 4 protein -
  DKL56_RS02595 (DKL56_02595) - 519327..519989 (-) 663 WP_109715297.1 YigZ family protein -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 40042.46 Da        Isoelectric Point: 5.6386

>NTDB_id=293021 DKL56_RS02580 WP_109715294.1 515171..516283(+) (recA) [Lactobacillus apis strain ESL0185]
MAKDEKQAALENALKKIEKNFGKGAVMRMGDKADTKISTVPSGSLALDAALGVGGYPRGRIVEIYGPESSGKTTVALHAV
AEVQKRGGTAAYIDAENAMDPAYAEALGVDVDSLILSQPNTGEEGLQIADTLITSGAIDILIVDSVAALVPQAEIDGEMG
DSHVGLQARLMSQALRKLSGNINKTKTIAIFINQIREKVGIMFGNPETTPGGRALKFYSTIRLEIRRAEKIKQTGGEITG
NRVKIKVVKNKVAPPFKVAEVDMMYGKGISQSGELLDMAADKDIVAKAGSWYSYNDERIGQGRENAKAYLEEHPDIYDEI
QQKVRQAYGIDEESIAEREDPEKVKSKKAKEAENAEKEVSEKKKTDNKSN

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=293021 DKL56_RS02580 WP_109715294.1 515171..516283(+) (recA) [Lactobacillus apis strain ESL0185]
TTGGCCAAAGATGAAAAGCAGGCTGCATTGGAAAATGCGCTGAAAAAAATCGAAAAGAATTTTGGTAAAGGTGCCGTTAT
GCGCATGGGCGACAAGGCGGATACCAAAATTTCAACCGTTCCATCCGGCTCGCTTGCATTAGATGCAGCTCTTGGGGTTG
GCGGCTATCCGCGAGGCAGAATTGTTGAAATTTATGGACCTGAATCTTCAGGTAAAACTACGGTTGCTCTGCACGCTGTG
GCTGAAGTGCAAAAGCGTGGCGGAACGGCTGCGTATATTGATGCGGAAAACGCAATGGATCCAGCATATGCGGAAGCTTT
AGGTGTTGATGTTGATTCACTTATCCTATCCCAGCCAAATACTGGTGAAGAAGGTTTGCAAATTGCGGACACACTGATTA
CGAGTGGCGCGATTGATATTTTAATTGTTGACTCTGTAGCCGCCTTAGTACCTCAAGCAGAAATTGATGGTGAAATGGGT
GACAGTCACGTTGGTTTGCAGGCTCGTTTGATGAGTCAGGCCTTACGTAAGCTGTCAGGAAACATTAATAAGACAAAAAC
GATTGCAATTTTTATTAATCAGATTCGTGAAAAAGTCGGTATTATGTTTGGTAATCCAGAAACTACTCCTGGTGGCCGTG
CCCTTAAGTTCTATTCTACGATTAGACTAGAGATTAGAAGAGCAGAAAAAATCAAGCAAACTGGTGGCGAAATTACTGGT
AACCGAGTAAAAATTAAAGTGGTTAAAAACAAGGTTGCACCGCCATTCAAAGTCGCTGAAGTTGATATGATGTATGGCAA
GGGTATTTCACAAAGTGGTGAATTACTTGATATGGCTGCCGATAAAGATATTGTTGCTAAAGCGGGTTCTTGGTATTCAT
ATAACGATGAAAGAATTGGACAAGGACGTGAGAATGCCAAAGCGTATCTTGAAGAGCATCCTGATATCTATGATGAAATT
CAACAGAAGGTAAGACAAGCATATGGCATTGACGAAGAGTCAATTGCTGAGCGTGAAGACCCAGAAAAAGTTAAAAGCAA
AAAGGCTAAAGAAGCCGAAAATGCTGAAAAGGAGGTTTCCGAAAAAAAGAAAACCGACAACAAAAGTAACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.134

92.703

0.724
  recA Streptococcus mutans UA159

66.017

97.027

0.641
  recA Streptococcus pneumoniae Rx1

66.011

96.216

0.635
  recA Streptococcus pneumoniae D39

66.011

96.216

0.635
  recA Streptococcus pneumoniae R6

66.011

96.216

0.635
  recA Streptococcus pneumoniae TIGR4

66.011

96.216

0.635
  recA Bacillus subtilis subsp. subtilis str. 168

70.695

89.459

0.632
  recA Streptococcus mitis NCTC 12261

67.251

92.432

0.622
  recA Streptococcus pyogenes NZ131

68.997

88.919

0.614
  recA Streptococcus mitis SK321

66.374

92.432

0.614
  recA Lactococcus lactis subsp. cremoris KW2

67.568

90

0.608
  recA Neisseria gonorrhoeae strain FA1090

61.094

88.919

0.543
  recA Neisseria gonorrhoeae MS11

61.094

88.919

0.543
  recA Neisseria gonorrhoeae MS11

61.094

88.919

0.543
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.976

88.649

0.541
  recA Helicobacter pylori 26695

58.017

92.703

0.538
  recA Helicobacter pylori strain NCTC11637

58.017

92.703

0.538
  recA Acinetobacter baylyi ADP1

60.372

87.297

0.527
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.353

91.892

0.527
  recA Acinetobacter baumannii D1279779

59.752

87.297

0.522
  recA Pseudomonas stutzeri DSM 10701

59.317

87.027

0.516
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.824

87.297

0.514
  recA Ralstonia pseudosolanacearum GMI1000

60.191

84.865

0.511
  recA Glaesserella parasuis strain SC1401

56.325

89.73

0.505
  recA Vibrio cholerae O1 biovar El Tor strain E7946

57.276

87.297

0.5
  recA Vibrio cholerae strain A1552

57.276

87.297

0.5

Multiple sequence alignment