Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DFH04_RS08905 Genome accession   NZ_CP029458
Coordinates   1881971..1883017 (+) Length   348 a.a.
NCBI ID   WP_003375450.1    Uniprot ID   A0A9P2G6Q4
Organism   Clostridium novyi strain 150557     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1876971..1888017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DFH04_RS08890 (DFH04_08890) - 1877517..1879862 (+) 2346 WP_045014880.1 FtsK/SpoIIIE family DNA translocase -
  DFH04_RS08895 (DFH04_08895) rimO 1879957..1881291 (+) 1335 WP_120362051.1 30S ribosomal protein S12 methylthiotransferase RimO -
  DFH04_RS08900 (DFH04_08900) pgsA 1881275..1881817 (+) 543 WP_003376978.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DFH04_RS08905 (DFH04_08905) recA 1881971..1883017 (+) 1047 WP_003375450.1 recombinase RecA Machinery gene
  DFH04_RS08910 (DFH04_08910) rny 1883304..1884818 (+) 1515 WP_039217887.1 ribonuclease Y -
  DFH04_RS08915 (DFH04_08915) - 1884958..1886151 (+) 1194 WP_003375694.1 pyridoxal phosphate-dependent aminotransferase -
  DFH04_RS08920 (DFH04_08920) - 1886238..1886492 (+) 255 WP_003376202.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37868.45 Da        Isoelectric Point: 7.3249

>NTDB_id=292531 DFH04_RS08905 WP_003375450.1 1881971..1883017(+) (recA) [Clostridium novyi strain 150557]
MNNEKMKALQAALTQIEKQFGKGSVMKLGEEQVLNIEAISTGSLSLDIALGIGGIPRGRIIEIFGPESSGKTTVALHIVA
EAQKAGGTAAFIDAEHALDPIYAKALGVDIDNLIVSQPDTGEQALEICEALVRSGAVDVIVVDSVAALVPKAEIEGEMGD
SHVGLQARLMSQALRKLTGSINKSKCAAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRKIEIIKQGDAFLGNR
TRVKVVKNKVAPPFKQAEFDIMYGSGISYEGNVLDVGVENEIIQKSGSWFSYKDTRLGQGRENVKQFLKENPNILVEVEN
QIRAKHNLQLRNENENKNKKESTEKVKE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=292531 DFH04_RS08905 WP_003375450.1 1881971..1883017(+) (recA) [Clostridium novyi strain 150557]
ATGAATAATGAAAAAATGAAAGCATTGCAAGCTGCTTTAACTCAGATAGAAAAACAATTTGGAAAAGGTTCGGTAATGAA
GCTAGGAGAAGAACAAGTTCTTAACATAGAAGCAATATCTACAGGAAGTTTGTCTTTAGATATAGCATTAGGAATTGGTG
GTATACCTAGAGGAAGAATTATTGAAATTTTTGGACCTGAATCATCAGGTAAAACAACAGTAGCATTACATATTGTTGCT
GAAGCACAAAAAGCTGGGGGTACTGCTGCATTCATAGATGCAGAACATGCATTAGATCCTATATATGCAAAAGCCCTTGG
AGTAGATATAGATAATTTAATAGTTTCTCAACCAGATACAGGAGAGCAAGCTTTAGAAATTTGTGAAGCATTAGTAAGAT
CAGGAGCTGTTGATGTTATAGTTGTAGACTCGGTAGCTGCATTAGTTCCAAAAGCAGAAATTGAAGGTGAAATGGGAGAT
TCTCATGTTGGTCTTCAAGCAAGACTTATGTCACAAGCATTAAGAAAATTAACAGGTTCTATTAATAAATCAAAATGTGC
TGCTATATTTATAAATCAGTTAAGAGAAAAAGTAGGTATAATGTTTGGAAATCCAGAGACAACGCCAGGTGGTAGAGCAT
TAAAATTCTATGCTTCTGTAAGATTAGATGTAAGAAAAATAGAAATTATAAAACAAGGTGATGCATTTTTAGGAAATAGA
ACAAGAGTAAAAGTAGTTAAAAATAAAGTAGCACCACCATTTAAACAGGCTGAATTTGATATAATGTACGGTAGTGGAAT
TTCTTATGAAGGTAATGTTCTTGATGTAGGAGTAGAAAATGAAATAATTCAAAAAAGTGGATCTTGGTTCTCTTATAAAG
ATACTAGATTAGGACAAGGAAGAGAGAATGTTAAACAATTCTTAAAGGAAAATCCTAATATATTAGTTGAAGTAGAAAAT
CAAATAAGAGCTAAACATAATCTTCAATTGAGAAATGAAAATGAAAATAAAAATAAAAAAGAAAGTACTGAAAAAGTAAA
GGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72.086

93.678

0.675
  recA Streptococcus pneumoniae R6

63.897

100

0.641
  recA Streptococcus pneumoniae Rx1

63.897

100

0.641
  recA Streptococcus pneumoniae D39

63.897

100

0.641
  recA Streptococcus pneumoniae TIGR4

63.897

100

0.641
  recA Streptococcus mitis NCTC 12261

63.977

99.713

0.638
  recA Streptococcus mitis SK321

63.689

99.713

0.635
  recA Latilactobacillus sakei subsp. sakei 23K

67.485

93.678

0.632
  recA Neisseria gonorrhoeae MS11

65.964

95.402

0.629
  recA Neisseria gonorrhoeae MS11

65.964

95.402

0.629
  recA Neisseria gonorrhoeae strain FA1090

65.964

95.402

0.629
  recA Streptococcus mutans UA159

62.216

100

0.629
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.97

95.977

0.624
  recA Vibrio cholerae strain A1552

64.97

95.977

0.624
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.975

93.103

0.624
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.455

94.828

0.621
  recA Ralstonia pseudosolanacearum GMI1000

66.873

92.816

0.621
  recA Acinetobacter baylyi ADP1

66.873

92.816

0.621
  recA Pseudomonas stutzeri DSM 10701

66.154

93.391

0.618
  recA Acinetobacter baumannii D1279779

66.563

92.816

0.618
  recA Lactococcus lactis subsp. cremoris KW2

65.046

94.54

0.615
  recA Streptococcus pyogenes NZ131

65.046

94.54

0.615
  recA Glaesserella parasuis strain SC1401

66.562

91.954

0.612
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.651

95.402

0.598
  recA Helicobacter pylori strain NCTC11637

63.889

93.103

0.595
  recA Helicobacter pylori 26695

63.58

93.103

0.592

Multiple sequence alignment