Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   P9215_RS08700 Genome accession   NC_009840
Coordinates   1571855..1572952 (+) Length   365 a.a.
NCBI ID   WP_012008451.1    Uniprot ID   A8G766
Organism   Prochlorococcus marinus str. MIT 9215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1566855..1577952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P9215_RS08665 (P9215_18281) - 1567439..1567741 (-) 303 WP_012008447.1 50S ribosomal protein L23 -
  P9215_RS08670 (P9215_18291) rplD 1567738..1568370 (-) 633 WP_012008448.1 50S ribosomal protein L4 -
  P9215_RS08675 (P9215_18301) rplC 1568367..1569020 (-) 654 WP_012008449.1 50S ribosomal protein L3 -
  P9215_RS08680 (P9215_18311) ndhN 1569298..1569774 (+) 477 WP_002807100.1 NAD(P)H-quinone oxidoreductase subunit N -
  P9215_RS08685 (P9215_18321) - 1569780..1570787 (+) 1008 WP_002807170.1 LdpA C-terminal domain-containing domain -
  P9215_RS08695 (P9215_18331) - 1570966..1571742 (+) 777 WP_012008450.1 HAD family hydrolase -
  P9215_RS08700 (P9215_18341) recA 1571855..1572952 (+) 1098 WP_012008451.1 recombinase RecA Machinery gene
  P9215_RS08705 (P9215_18351) - 1572955..1573200 (-) 246 WP_012008452.1 DUF2839 domain-containing protein -
  P9215_RS08710 (P9215_18361) - 1573229..1574677 (-) 1449 WP_012008453.1 DNA helicase -
  P9215_RS08715 (P9215_18371) - 1574773..1575612 (+) 840 WP_012008454.1 prephenate/arogenate dehydrogenase -
  P9215_RS08720 (P9215_18381) crtD 1575602..1577107 (-) 1506 WP_012008455.1 C-3',4' desaturase CrtD -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39433.14 Da        Isoelectric Point: 6.3069

>NTDB_id=29248 P9215_RS08700 WP_012008451.1 1571855..1572952(+) (recA) [Prochlorococcus marinus str. MIT 9215]
MSLEEKKTTESKEKDKALSLVLGQIERNFGRGSIMRLGDASRMKVETISTGALTLDLALGGGYPKGRVVEVYGPESSGKT
TLTLHAIAEVQKNGGVAAFVDAEHALDPVYAASLGVDVENLLVSQPDTGEMALEIVDQLIRSSAVDLVVVDSVAALTPRA
EIEGEMGDHVIGSQARLMSQAMRKITGNIGKSGCTVIFLNQLRLKIGITYGNPETTTGGNALKFYASVRLDIRRIQTLKR
GTEEYGIRAKVKVAKNKVAPPFRIAEFDILFGKGISTTGCLLDLAEETNIIIRRGAWYSYEGENIGQGRDNTIIWLDQNL
EIKNKVESMIKEKLTEGTEVSSNSMKALNSNPTSTIAVNDIKTVA

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=29248 P9215_RS08700 WP_012008451.1 1571855..1572952(+) (recA) [Prochlorococcus marinus str. MIT 9215]
ATGAGCCTTGAAGAAAAGAAAACAACTGAATCAAAAGAAAAAGACAAAGCATTAAGTCTTGTCTTAGGTCAAATAGAAAG
AAATTTTGGACGAGGATCAATAATGAGACTTGGTGACGCCTCAAGAATGAAAGTAGAAACAATATCTACTGGAGCGCTCA
CCTTAGATTTAGCATTAGGAGGAGGTTATCCAAAAGGAAGAGTAGTAGAAGTTTACGGACCAGAAAGCTCAGGAAAAACA
ACATTAACACTTCACGCGATTGCGGAAGTCCAAAAAAATGGAGGAGTAGCTGCATTTGTAGATGCTGAGCATGCACTCGA
TCCTGTTTATGCAGCCTCTCTAGGAGTTGATGTTGAAAATTTGTTAGTTTCACAACCAGATACTGGTGAAATGGCTCTAG
AAATAGTTGACCAACTTATAAGATCAAGTGCAGTAGATCTTGTAGTCGTTGACTCGGTCGCAGCACTAACCCCGAGAGCC
GAGATAGAAGGAGAGATGGGAGATCACGTAATTGGAAGCCAAGCAAGGCTAATGAGTCAAGCAATGAGGAAAATAACAGG
AAATATTGGCAAATCTGGATGTACGGTAATATTCCTGAATCAATTACGCCTAAAAATTGGCATTACATACGGCAATCCAG
AAACAACCACAGGAGGTAATGCATTGAAATTTTACGCCTCAGTGAGACTTGATATCAGAAGAATTCAAACTCTTAAAAGA
GGTACTGAAGAATATGGCATAAGAGCAAAAGTGAAAGTAGCAAAAAACAAAGTTGCTCCACCATTTAGAATTGCAGAATT
TGATATTCTCTTCGGAAAAGGTATTAGTACAACAGGATGTTTATTAGATTTAGCAGAAGAGACCAATATCATAATAAGGA
GAGGTGCTTGGTATAGTTATGAAGGAGAAAATATTGGACAAGGAAGAGATAATACAATAATTTGGCTTGATCAAAACTTG
GAAATCAAGAATAAAGTAGAATCCATGATTAAAGAGAAATTAACAGAAGGAACTGAAGTTAGTTCTAATTCAATGAAAGC
ATTAAATAGTAACCCTACTAGTACCATTGCTGTTAATGATATAAAAACAGTAGCTTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8G766

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

65.217

88.219

0.575
  recA Acinetobacter baumannii D1279779

63.914

89.589

0.573
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae MS11

60.831

92.329

0.562
  recA Neisseria gonorrhoeae strain FA1090

60.831

92.329

0.562
  recA Pseudomonas stutzeri DSM 10701

62.733

88.219

0.553
  recA Streptococcus pneumoniae Rx1

54.918

100

0.551
  recA Streptococcus pneumoniae D39

54.918

100

0.551
  recA Streptococcus pneumoniae R6

54.918

100

0.551
  recA Streptococcus pneumoniae TIGR4

54.918

100

0.551
  recA Glaesserella parasuis strain SC1401

61.094

90.137

0.551
  recA Helicobacter pylori strain NCTC11637

60.423

90.685

0.548
  recA Helicobacter pylori 26695

60.423

90.685

0.548
  recA Ralstonia pseudosolanacearum GMI1000

63.666

85.205

0.542
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.982

91.507

0.54
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.18

88.219

0.54
  recA Vibrio cholerae strain A1552

61.18

88.219

0.54
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.752

88.493

0.529
  recA Bacillus subtilis subsp. subtilis str. 168

59.813

87.945

0.526
  recA Streptococcus mitis NCTC 12261

56.213

92.603

0.521
  recA Streptococcus mutans UA159

58.154

89.041

0.518
  recA Streptococcus mitis SK321

55.917

92.603

0.518
  recA Streptococcus pyogenes NZ131

53.409

96.438

0.515
  recA Latilactobacillus sakei subsp. sakei 23K

59.365

86.301

0.512
  recA Lactococcus lactis subsp. cremoris KW2

56.79

88.767

0.504
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.287

90.685

0.501

Multiple sequence alignment