Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DJ533_RS11690 Genome accession   NZ_CP029397
Coordinates   1944618..1945664 (+) Length   348 a.a.
NCBI ID   WP_065992871.1    Uniprot ID   A0A2S2FE07
Organism   Acinetobacter defluvii strain WCHA30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1939618..1950664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DJ533_RS11660 (DJ533_11675) - 1939678..1940298 (+) 621 WP_065992882.1 aminotransferase -
  DJ533_RS11665 (DJ533_11680) - 1940451..1940672 (+) 222 WP_228716474.1 hypothetical protein -
  DJ533_RS11670 (DJ533_11685) - 1940764..1941387 (+) 624 WP_065992879.1 FMN-binding negative transcriptional regulator -
  DJ533_RS11675 (DJ533_11690) rtcR 1941384..1942976 (-) 1593 WP_065992877.1 RNA repair transcriptional activator RtcR -
  DJ533_RS11680 (DJ533_11695) - 1943331..1944017 (+) 687 WP_065992875.1 HAD-IA family hydrolase -
  DJ533_RS11685 (DJ533_11700) - 1944001..1944459 (+) 459 WP_065992873.1 RNA-binding S4 domain-containing protein -
  DJ533_RS11690 (DJ533_11705) recA 1944618..1945664 (+) 1047 WP_065992871.1 recombinase RecA Machinery gene
  DJ533_RS11695 (DJ533_11710) - 1945814..1946416 (+) 603 WP_065992870.1 regulatory protein RecX -
  DJ533_RS11700 (DJ533_11715) - 1946773..1947162 (-) 390 WP_171488561.1 transposase -
  DJ533_RS11705 (DJ533_11720) - 1947182..1947468 (-) 287 Protein_1788 IS630 transposase-related protein -
  DJ533_RS11710 (DJ533_11725) - 1947508..1948254 (-) 747 Protein_1789 IS5 family transposase -
  DJ533_RS11720 (DJ533_11735) - 1948503..1949942 (-) 1440 WP_065993063.1 M48 family metalloprotease -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37710.13 Da        Isoelectric Point: 5.0467

>NTDB_id=292227 DJ533_RS11690 WP_065992871.1 1944618..1945664(+) (recA) [Acinetobacter defluvii strain WCHA30]
MDDNKSKALNAALSQIEKQFGKNTVMRLGDNTVQAVESVSTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMTLQAIA
QCQKAGGTCAFIDAEHALDPQYARKLGVDIDNLLVSQPDNGEQALEIADMLVRSGAIDMIVVDSVAALTPKAEIEGEMGD
SHMGLQARLMSQALRKITGNAKRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGQVKEGDEIVGSE
TRVKVVKNKMAPPFREAVFQIMYGKGVNHLGELVDLAVAQDIVHKAGAWYSYQGDKIGQGKNNAIRHMEENPEMAAEIEK
LIREKLLTTSNAAPVEEKDEEESDFLDV

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=292227 DJ533_RS11690 WP_065992871.1 1944618..1945664(+) (recA) [Acinetobacter defluvii strain WCHA30]
ATGGATGATAACAAAAGTAAAGCGCTCAATGCTGCATTAAGTCAAATTGAAAAACAATTTGGTAAAAATACAGTGATGCG
TTTGGGTGACAATACTGTCCAAGCAGTAGAGTCAGTTTCTACAGGTTCTTTAACACTAGATATCGCATTGGGTATCGGTG
GTTTGCCTAAAGGTCGTATTGTTGAGATTTATGGTCCTGAATCTTCAGGTAAAACCACCATGACTTTACAAGCGATTGCA
CAATGCCAAAAAGCGGGTGGAACTTGTGCCTTTATTGATGCTGAGCATGCACTTGATCCTCAATATGCACGTAAACTTGG
TGTAGATATTGATAATTTATTGGTTTCTCAACCAGATAATGGTGAGCAAGCCCTTGAAATTGCCGATATGCTGGTTCGTT
CAGGTGCGATTGATATGATCGTAGTCGACTCAGTTGCAGCACTCACACCAAAGGCTGAAATTGAAGGTGAAATGGGCGAC
TCACACATGGGTCTACAAGCACGTTTGATGAGCCAAGCATTGCGTAAAATCACAGGTAATGCCAAACGCTCAAACTGTAT
GGTAATCTTCATTAACCAGATTCGTATGAAAATTGGGGTGATGTTTGGTAGCCCTGAAACCACTACTGGTGGTAATGCTT
TAAAATTCTATGCATCTGTACGTCTTGATATCCGTCGTATCGGTCAAGTCAAGGAAGGCGATGAGATCGTTGGTTCTGAA
ACACGTGTTAAAGTTGTCAAGAATAAAATGGCACCTCCGTTCCGTGAAGCAGTTTTCCAAATCATGTATGGTAAAGGTGT
TAACCATTTAGGTGAGTTAGTCGATCTTGCCGTTGCACAGGATATCGTGCACAAAGCAGGTGCTTGGTATTCATATCAAG
GTGACAAAATCGGTCAAGGTAAAAACAATGCCATCCGTCACATGGAAGAAAATCCAGAAATGGCAGCCGAAATCGAAAAA
TTGATTCGTGAAAAGTTACTCACCACATCAAATGCTGCACCAGTTGAAGAAAAAGACGAAGAAGAATCAGACTTTTTAGA
TGTCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S2FE07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Acinetobacter baylyi ADP1

89.368

100

0.894
  recA Acinetobacter baumannii D1279779

89.884

99.425

0.894
  recA Pseudomonas stutzeri DSM 10701

75.882

97.701

0.741
  recA Vibrio cholerae strain A1552

72.093

98.851

0.713
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.093

98.851

0.713
  recA Glaesserella parasuis strain SC1401

69.318

100

0.701
  recA Ralstonia pseudosolanacearum GMI1000

70.122

94.253

0.661
  recA Neisseria gonorrhoeae MS11

69.444

93.103

0.647
  recA Neisseria gonorrhoeae MS11

69.444

93.103

0.647
  recA Neisseria gonorrhoeae strain FA1090

69.444

93.103

0.647
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.138

93.966

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.35

95.115

0.612
  recA Helicobacter pylori 26695

61.808

98.563

0.609
  recA Helicobacter pylori strain NCTC11637

61.516

98.563

0.606
  recA Streptococcus mitis SK321

60.411

97.989

0.592
  recA Streptococcus pneumoniae Rx1

62.577

93.678

0.586
  recA Streptococcus pneumoniae D39

62.577

93.678

0.586
  recA Streptococcus pneumoniae R6

62.577

93.678

0.586
  recA Streptococcus pneumoniae TIGR4

62.577

93.678

0.586
  recA Streptococcus mutans UA159

58.333

100

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.444

90.517

0.583
  recA Streptococcus mitis NCTC 12261

61.92

92.816

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Streptococcus pyogenes NZ131

60.671

94.253

0.572
  recA Latilactobacillus sakei subsp. sakei 23K

59.502

92.241

0.549
  recA Lactococcus lactis subsp. cremoris KW2

58.514

92.816

0.543

Multiple sequence alignment