Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   APS58_RS08330 Genome accession   NZ_CP029373
Coordinates   1860086..1861150 (+) Length   354 a.a.
NCBI ID   WP_011797641.1    Uniprot ID   A1TW37
Organism   Paracidovorax citrulli strain M6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1855086..1866150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  APS58_RS08305 (APS58_1661) - 1855138..1856061 (+) 924 WP_011797636.1 LysR substrate-binding domain-containing protein -
  APS58_RS08310 (APS58_1662) - 1856378..1856743 (+) 366 WP_017439808.1 DUF4148 domain-containing protein -
  APS58_RS08315 (APS58_1663) - 1856864..1858321 (-) 1458 WP_011797638.1 sensor histidine kinase -
  APS58_RS08320 (APS58_1664) - 1858619..1859293 (-) 675 WP_011797639.1 response regulator transcription factor -
  APS58_RS08325 (APS58_1665) - 1859400..1859924 (-) 525 WP_048857600.1 MarR family winged helix-turn-helix transcriptional regulator -
  APS58_RS08330 (APS58_1666) recA 1860086..1861150 (+) 1065 WP_011797641.1 recombinase RecA Machinery gene
  APS58_RS08335 (APS58_1667) recX 1861216..1861686 (+) 471 WP_011797642.1 recombination regulator RecX -
  APS58_RS08340 (APS58_1668) - 1861740..1864127 (-) 2388 WP_017438677.1 DUF1631 family protein -
  APS58_RS08345 (APS58_1669) secF 1864280..1865233 (-) 954 WP_011797644.1 protein translocase subunit SecF -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37717.18 Da        Isoelectric Point: 5.0548

>NTDB_id=292136 APS58_RS08330 WP_011797641.1 1860086..1861150(+) (recA) [Paracidovorax citrulli strain M6]
MDAPVKNNAANSEKAKALQAALAQIEKQFGKGTIMRLGEGEAIEDIQVVSTGSLGLDVALGVGGLPRGRVIEIYGPESSG
KTTLTLQVIAEMQKQNGTCAFVDAEHALDIQYAQKLGVHVPDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAALTP
KAEIEGEMGDALPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGTI
KKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVNARIIEKSGAWYAYNGEKIGQGRDNAREFLRE
NADLAREIENKVRDGLGVSQLPPVAAGAAAADEA

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=292136 APS58_RS08330 WP_011797641.1 1860086..1861150(+) (recA) [Paracidovorax citrulli strain M6]
ATGGACGCACCCGTCAAGAACAACGCCGCCAACAGCGAAAAGGCCAAGGCCCTGCAGGCGGCACTCGCCCAGATCGAAAA
GCAGTTCGGCAAGGGCACCATCATGCGCCTGGGCGAAGGCGAAGCCATCGAAGATATCCAGGTCGTCTCCACCGGCTCGC
TGGGCCTGGACGTCGCCCTGGGCGTGGGCGGCCTGCCCCGCGGCCGCGTGATCGAGATCTACGGCCCCGAATCCTCCGGC
AAGACCACGCTCACGCTGCAGGTCATCGCCGAGATGCAGAAGCAGAACGGCACCTGCGCCTTCGTCGATGCCGAGCACGC
GCTCGACATCCAGTACGCCCAGAAGCTCGGCGTGCACGTGCCCGACCTGCTCATCAGCCAGCCCGACACCGGCGAGCAGG
CCCTGGAAATCGTGGACAGCCTCGTGCGCTCCGGCGCCGTGGACCTGATCGTGGTGGACTCGGTCGCAGCACTGACCCCG
AAGGCGGAAATCGAAGGCGAGATGGGCGATGCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCT
CACCGCCACGATCAAGAAGACGAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCA
GCCCCGAGACCACCACGGGCGGCAACGCGCTGAAGTTCTACGCCTCCGTGCGCCTGGACATCCGCCGCACTGGCACCATC
AAGAAGGGCGACGAGGCCATCGGCAACGAGACCAAGGTGAAGGTGGTGAAGAACAAGGTGAGCCCGCCCTTCAAGACGGC
CGAGTTCGACATCCTCTTCGGCGAAGGCATCAGCCGCGAGGGCGAGATCATCGACATGGGCGTGAATGCCCGCATCATCG
AGAAGAGCGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCACGCGAGTTCCTGCGCGAG
AACGCCGACCTCGCCCGCGAGATCGAGAACAAGGTGCGCGACGGCCTGGGCGTCTCGCAACTGCCGCCCGTGGCAGCCGG
CGCTGCTGCTGCCGACGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(16-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A1TW37

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.006

95.763

0.785
  recA Pseudomonas stutzeri DSM 10701

69.942

97.74

0.684
  recA Glaesserella parasuis strain SC1401

68.824

96.045

0.661
  recA Acinetobacter baylyi ADP1

67.93

96.893

0.658
  recA Neisseria gonorrhoeae MS11

72.136

91.243

0.658
  recA Neisseria gonorrhoeae MS11

72.136

91.243

0.658
  recA Neisseria gonorrhoeae strain FA1090

72.136

91.243

0.658
  recA Acinetobacter baumannii D1279779

70.245

92.09

0.647
  recA Vibrio cholerae strain A1552

66.279

97.175

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.279

97.175

0.644
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.602

95.763

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.261

92.938

0.616
  recA Helicobacter pylori strain NCTC11637

63.664

94.068

0.599
  recA Helicobacter pylori 26695

63.664

94.068

0.599
  recA Bacillus subtilis subsp. subtilis str. 168

64.526

92.373

0.596
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

94.068

0.593
  recA Streptococcus pyogenes NZ131

59.42

97.458

0.579
  recA Lactococcus lactis subsp. cremoris KW2

60.725

93.503

0.568
  recA Streptococcus pneumoniae TIGR4

60.121

93.503

0.562
  recA Streptococcus pneumoniae Rx1

60.121

93.503

0.562
  recA Streptococcus pneumoniae D39

60.121

93.503

0.562
  recA Streptococcus pneumoniae R6

60.121

93.503

0.562
  recA Streptococcus mitis NCTC 12261

59.819

93.503

0.559
  recA Streptococcus mitis SK321

59.819

93.503

0.559
  recA Streptococcus mutans UA159

60.923

91.808

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

90.678

0.545

Multiple sequence alignment