Detailed information NTG0029202

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: SSED_RS06675
• Genome accession: NC_009831
• Coordinates: 1544274..1545335 (+)
• Length: 353 a.a.
• NCBI ID: WP_012141647.1
• Uniprot ID: A8FST8
• Organism: Shewanella sediminis HAW-EB3
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1545549..1546142	1544274..1545335	flank	214

Gene organization within MGE regions

Location: 1544274..1546142

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SSED_RS06675 (Ssed_1300)	recA	1544274..1545335 (+)	1062	WP_012141647.1	recombinase RecA	Machinery gene
SSED_RS23930	-	1545510..1545665 (+)	156	WP_083758928.1	RecX family transcriptional regulator	-

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37636.23 Da
• Isoelectric Point: 5.0312

>NTDB_id=29202 SSED_RS06675 WP_012141647.1 1544274..1545335(+) (recA) [Shewanella sediminis HAW-EB3]
MKIDANKEKALNAVLGQIEKQFGKGSIMKLGENRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKVCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQTNTMLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDRDEVIG
NETRVKVVKNKIAAPFKQAEFQILYGQGINSTGELVDLGVAHKLVEKAGAWYSYKGDKIGQGRANAGKYLIENPAVAQEI
DVALRALLLTPAAPVADSATGDENIDLETGEVF

Nucleotide

• Length: 1062 bp

>NTDB_id=29202 SSED_RS06675 WP_012141647.1 1544274..1545335(+) (recA) [Shewanella sediminis HAW-EB3]
ATGAAGATAGACGCGAACAAAGAGAAAGCACTTAACGCCGTTTTAGGGCAGATCGAAAAGCAATTCGGTAAAGGCTCTAT
CATGAAGTTGGGCGAGAATCGCTCAATGGATGTTGAGACTATCTCTACCGGTTCACTCTCTCTGGATATAGCCCTGGGCG
CCGGCGGTCTTCCGATGGGACGTATCGTCGAGATTTACGGCCCTGAATCTTCGGGTAAAACAACTTTGACGCTTGAAGTT
ATTGCTGCAGCCCAACGTGAGGGTAAAGTGTGTGCTTTTATCGATGCGGAACACGCACTGGACCCTATCTACGCTAAAAA
GTTAGGTGTGGATATCGATAACCTACTTTGTTCTCAACCTGATACCGGTGAGCAAGCATTGGAGATTTGTGATGCCTTAA
CTCGCTCAGGCGCCGTCGATGTTATCGTTGTCGACTCGGTTGCGGCATTGACGCCTAAAGCCGAGATTGAAGGTGAGATT
GGTGATTCCCATATGGGACTTGCGGCTCGTATGATGAGCCAGGCGATGCGTAAGCTTGCGGGTAACCTCAAGCAAACCAA
CACCATGCTTATTTTCATTAACCAGATTCGTATGAAGATTGGTGTGATGTTCGGTAATCCTGAAACCACCACGGGTGGTA
ATGCGTTGAAGTTTTATGCTTCGGTTCGTCTCGATATTCGCCGTACCGGTGCAATCAAAGACCGTGATGAAGTTATTGGT
AACGAGACTCGCGTTAAGGTTGTGAAAAACAAGATTGCAGCGCCGTTTAAGCAAGCTGAGTTCCAGATCCTTTACGGTCA
GGGTATCAACAGCACCGGCGAGCTTGTCGACCTGGGTGTTGCCCATAAGCTCGTTGAAAAAGCGGGTGCCTGGTACAGCT
ATAAAGGGGATAAGATCGGCCAAGGTCGTGCTAATGCCGGTAAGTACCTGATTGAGAACCCTGCCGTTGCACAAGAAATT
GATGTAGCCCTTCGTGCCTTACTGCTAACACCGGCAGCGCCAGTTGCAGATTCTGCAACCGGAGATGAAAACATCGATCT
TGAAACGGGTGAAGTGTTTTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (9-270)

3D structure

• AlphaFold DB: A8FST8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae O1 biovar El Tor strain E7946	80.286	99.15	0.796
recA	Vibrio cholerae strain A1552	80.286	99.15	0.796
recA	Pseudomonas stutzeri DSM 10701	72.647	96.317	0.7
recA	Acinetobacter baumannii D1279779	69.275	97.734	0.677
recA	Acinetobacter baylyi ADP1	71.903	93.768	0.674
recA	Glaesserella parasuis strain SC1401	68.047	95.751	0.652
recA	Neisseria gonorrhoeae MS11	68.731	91.501	0.629
recA	Neisseria gonorrhoeae MS11	68.731	91.501	0.629
recA	Neisseria gonorrhoeae strain FA1090	68.731	91.501	0.629
recA	Ralstonia pseudosolanacearum GMI1000	68.966	90.368	0.623
recA	Streptococcus pyogenes NZ131	58.611	100	0.598
recA	Streptococcus mitis SK321	63.415	92.918	0.589
recA	Streptococcus pneumoniae Rx1	63.222	93.201	0.589
recA	Streptococcus pneumoniae TIGR4	63.222	93.201	0.589
recA	Streptococcus pneumoniae R6	63.222	93.201	0.589
recA	Streptococcus pneumoniae D39	63.222	93.201	0.589
recA	Streptococcus mitis NCTC 12261	63.11	92.918	0.586
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.346	91.785	0.572
recA	Latilactobacillus sakei subsp. sakei 23K	59.064	96.884	0.572
recA	Lactococcus lactis subsp. cremoris KW2	61.094	93.201	0.569
recA	Helicobacter pylori strain NCTC11637	61.656	92.351	0.569
recA	Streptococcus mutans UA159	61.28	92.918	0.569
recA	Helicobacter pylori 26695	61.35	92.351	0.567
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.182	93.201	0.561
recA	Bacillus subtilis subsp. subtilis str. 168	61.371	90.935	0.558
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.317	89.235	0.538