Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCC13826_RS08925 Genome accession   NC_009802
Coordinates   1768519..1769616 (+) Length   365 a.a.
NCBI ID   WP_002940852.1    Uniprot ID   U2F3S7
Organism   Campylobacter concisus 13826     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1763519..1774616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCC13826_RS08890 (CCC13826_2101) modA 1763551..1764249 (-) 699 WP_012140444.1 molybdate ABC transporter substrate-binding protein -
  CCC13826_RS08895 (CCC13826_2100) - 1764377..1765465 (+) 1089 WP_012140445.1 nicotinate phosphoribosyltransferase -
  CCC13826_RS08900 (CCC13826_2099) - 1765474..1765971 (+) 498 WP_012140447.1 hypothetical protein -
  CCC13826_RS08905 (CCC13826_2098) - 1766084..1766899 (+) 816 WP_048809958.1 menaquinone biosynthesis family protein -
  CCC13826_RS08910 (CCC13826_2097) fliQ 1766896..1767165 (+) 270 WP_223154231.1 flagellar biosynthesis protein FliQ -
  CCC13826_RS08915 (CCC13826_2096) - 1767162..1767959 (+) 798 WP_012140451.1 UDP-N-acetylmuramate dehydrogenase -
  CCC13826_RS08920 (CCC13826_2095) - 1767968..1768456 (+) 489 WP_012140453.1 hypothetical protein -
  CCC13826_RS08925 (CCC13826_2094) recA 1768519..1769616 (+) 1098 WP_002940852.1 recombinase RecA Machinery gene
  CCC13826_RS08930 (CCC13826_2093) eno 1769616..1770866 (+) 1251 WP_012140455.1 phosphopyruvate hydratase -
  CCC13826_RS11085 - 1770971..1771153 (+) 183 WP_178140078.1 hypothetical protein -
  CCC13826_RS08940 (CCC13826_2091) - 1771159..1772019 (+) 861 WP_012140457.1 AMIN domain-containing protein -
  CCC13826_RS08945 (CCC13826_2090) - 1772086..1773147 (+) 1062 WP_012140458.1 tyrosine-type recombinase/integrase -
  CCC13826_RS08950 (CCC13826_2352) - 1773181..1773858 (+) 678 Protein_1772 glycerate kinase -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 39223.86 Da        Isoelectric Point: 5.0163

>NTDB_id=29183 CCC13826_RS08925 WP_002940852.1 1768519..1769616(+) (recA) [Campylobacter concisus 13826]
MAKEKDSDKKIAIPESEADKKKALELALKQIDKAFGKGTLLRLGDKEVEAIESIPTGSLGLDLALGIGGVPKGRIIEIYG
PESSGKTTLTLHIIAEAQKAGGICAFVDAEHALDVKYASNLGVNTDNLYVSQPDFGEQALEIVETLARSGAIDLIVVDSV
AALTPKSEIDGDMGDQHVGLQARLMSQALRKLTGILSKMKTTVIFINQIRMKIGMMGYGTPETTTGGNALKFYSSVRIDV
RKIATLKQNDEPIGNRTKAKVVKNKVAPPFKVAEFDIMFGEGVSKEGEIIDYGVKLDIIDKSGAWFSYKAEKLGQGRENA
KAYLKEHPEISDEIVAAIKGSMGIDHLISSGAKDEDDDTNEAGDE

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=29183 CCC13826_RS08925 WP_002940852.1 1768519..1769616(+) (recA) [Campylobacter concisus 13826]
ATGGCAAAAGAAAAAGATAGTGACAAAAAGATAGCTATCCCAGAGAGCGAAGCGGACAAGAAAAAGGCGCTTGAGCTTGC
TCTAAAGCAGATCGATAAAGCTTTTGGCAAAGGCACGCTTTTAAGACTTGGCGACAAAGAGGTTGAGGCTATCGAGTCGA
TACCGACTGGCTCGCTAGGGCTTGATCTGGCTCTTGGCATAGGTGGCGTTCCAAAAGGCAGGATCATCGAGATCTACGGA
CCAGAGAGCTCTGGTAAGACCACACTCACACTTCACATCATCGCTGAAGCACAAAAAGCTGGCGGAATTTGTGCGTTTGT
CGATGCAGAGCACGCACTAGACGTAAAATACGCTTCAAATTTAGGCGTAAATACTGACAACCTCTACGTCTCTCAGCCTG
ACTTTGGCGAGCAGGCACTTGAGATCGTTGAGACGCTCGCAAGAAGCGGTGCGATCGATCTTATCGTAGTTGATAGCGTC
GCAGCTCTTACTCCAAAGAGCGAGATAGACGGCGATATGGGCGATCAGCATGTTGGTCTGCAAGCAAGACTAATGAGTCA
GGCGCTTAGAAAGCTAACTGGAATTTTAAGCAAAATGAAGACAACTGTTATCTTCATCAACCAAATTCGTATGAAGATCG
GTATGATGGGATATGGCACGCCAGAGACCACAACTGGCGGTAATGCGCTTAAATTTTACTCATCTGTAAGAATAGATGTT
AGAAAGATAGCCACACTTAAACAAAACGACGAGCCTATCGGCAACCGCACAAAAGCAAAAGTCGTTAAAAACAAGGTGGC
ACCTCCATTTAAAGTGGCTGAATTTGACATCATGTTTGGCGAGGGTGTGAGCAAAGAGGGCGAGATCATCGACTATGGCG
TAAAGCTCGACATCATCGACAAATCAGGCGCGTGGTTTAGCTACAAGGCCGAAAAACTAGGTCAAGGCAGAGAAAACGCC
AAAGCCTACCTAAAAGAGCACCCAGAAATTTCTGATGAGATAGTAGCGGCGATCAAAGGCTCAATGGGGATAGATCACCT
AATAAGCAGCGGCGCAAAAGACGAAGACGACGACACAAACGAAGCAGGAGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2F3S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

82.647

93.151

0.77
  recA Helicobacter pylori 26695

80.615

89.041

0.718
  recA Helicobacter pylori strain NCTC11637

80.308

89.041

0.715
  recA Neisseria gonorrhoeae MS11

65.294

93.151

0.608
  recA Neisseria gonorrhoeae MS11

65.294

93.151

0.608
  recA Neisseria gonorrhoeae strain FA1090

65.294

93.151

0.608
  recA Glaesserella parasuis strain SC1401

59.946

100

0.603
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.278

89.589

0.603
  recA Acinetobacter baylyi ADP1

63.235

93.151

0.589
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

90.137

0.586
  recA Pseudomonas stutzeri DSM 10701

64.815

88.767

0.575
  recA Acinetobacter baumannii D1279779

63.063

91.233

0.575
  recA Streptococcus pneumoniae D39

61.631

90.685

0.559
  recA Streptococcus pneumoniae TIGR4

61.631

90.685

0.559
  recA Streptococcus pneumoniae Rx1

61.631

90.685

0.559
  recA Streptococcus pneumoniae R6

61.631

90.685

0.559
  recA Streptococcus mitis NCTC 12261

61.329

90.685

0.556
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.537

85.753

0.553
  recA Vibrio cholerae strain A1552

64.537

85.753

0.553
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.412

93.151

0.553
  recA Streptococcus pyogenes NZ131

61.398

90.137

0.553
  recA Streptococcus mitis SK321

60.725

90.685

0.551
  recA Lactococcus lactis subsp. cremoris KW2

60.121

90.685

0.545
  recA Ralstonia pseudosolanacearum GMI1000

62.776

86.849

0.545
  recA Latilactobacillus sakei subsp. sakei 23K

58.017

93.973

0.545
  recA Streptococcus mutans UA159

60

90.411

0.542

Multiple sequence alignment