Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | CDIF104452_RS06865 | Genome accession | NZ_CP029345 |
| Coordinates | 1427027..1428073 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain DSM 104452 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1400979..1465813 | 1427027..1428073 | within | 0 |
Gene organization within MGE regions
Location: 1400979..1465813
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDIF104452_RS06750 (CDIF104452_01368) | rimP | 1403395..1403856 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| CDIF104452_RS06755 (CDIF104452_01369) | nusA | 1403886..1405040 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| CDIF104452_RS06760 (CDIF104452_01370) | rnpM | 1405047..1405328 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| CDIF104452_RS06765 (CDIF104452_01371) | - | 1405318..1405629 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| CDIF104452_RS06770 (CDIF104452_01372) | infB | 1405651..1407591 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| CDIF104452_RS06775 (CDIF104452_01373) | rbfA | 1407634..1408014 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| CDIF104452_RS06780 (CDIF104452_01374) | - | 1407995..1408672 (+) | 678 | Protein_1246 | DHH family phosphoesterase | - |
| CDIF104452_RS06785 (CDIF104452_01375) | tnpB | 1409312..1410430 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| CDIF104452_RS06790 (CDIF104452_01376) | - | 1410548..1410853 (+) | 306 | Protein_1248 | DHH family phosphoesterase | - |
| CDIF104452_RS06795 (CDIF104452_01377) | truB | 1410866..1411771 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| CDIF104452_RS06800 (CDIF104452_01378) | - | 1411902..1412831 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| CDIF104452_RS06805 (CDIF104452_01379) | rpsO | 1412935..1413192 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| CDIF104452_RS06810 (CDIF104452_01380) | - | 1413432..1414277 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| CDIF104452_RS06815 (CDIF104452_01381) | pnp | 1414402..1416513 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| CDIF104452_RS06820 (CDIF104452_01382) | - | 1416779..1417522 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| CDIF104452_RS06825 (CDIF104452_01383) | - | 1417680..1418927 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| CDIF104452_RS06830 (CDIF104452_01384) | - | 1418962..1419207 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| CDIF104452_RS06835 (CDIF104452_01385) | dapG | 1419217..1420440 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| CDIF104452_RS06840 (CDIF104452_01386) | - | 1420553..1421287 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| CDIF104452_RS06845 (CDIF104452_01387) | - | 1421410..1423821 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| CDIF104452_RS06850 (CDIF104452_01388) | mnmH | 1423824..1424882 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| CDIF104452_RS06855 (CDIF104452_01389) | rimO | 1424876..1426210 (+) | 1335 | WP_131773009.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| CDIF104452_RS06860 (CDIF104452_01390) | pgsA | 1426197..1426739 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| CDIF104452_RS06865 (CDIF104452_01391) | recA | 1427027..1428073 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| CDIF104452_RS06870 (CDIF104452_01392) | rny | 1428249..1429790 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| CDIF104452_RS06875 (CDIF104452_01393) | - | 1430425..1432206 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| CDIF104452_RS06880 (CDIF104452_01394) | lepB | 1432288..1432818 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| CDIF104452_RS06885 (CDIF104452_01395) | - | 1432858..1433682 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| CDIF104452_RS06890 (CDIF104452_01396) | - | 1433939..1434847 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| CDIF104452_RS06895 (CDIF104452_01397) | purB | 1434991..1436436 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| CDIF104452_RS06900 (CDIF104452_01398) | - | 1436747..1437199 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| CDIF104452_RS06905 (CDIF104452_01399) | - | 1437611..1439188 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| CDIF104452_RS06910 (CDIF104452_01400) | - | 1439336..1440088 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| CDIF104452_RS06915 (CDIF104452_01401) | - | 1440221..1441567 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| CDIF104452_RS06920 (CDIF104452_01402) | - | 1441679..1442875 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| CDIF104452_RS06925 (CDIF104452_01403) | galT | 1443260..1444210 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| CDIF104452_RS06930 (CDIF104452_01404) | - | 1444371..1445123 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| CDIF104452_RS06935 (CDIF104452_01405) | - | 1445215..1445991 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| CDIF104452_RS06940 (CDIF104452_01406) | - | 1446306..1448204 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| CDIF104452_RS06945 (CDIF104452_01407) | - | 1448332..1449453 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| CDIF104452_RS06950 (CDIF104452_01408) | - | 1449652..1449984 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| CDIF104452_RS06955 (CDIF104452_01409) | - | 1449971..1451029 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| CDIF104452_RS06960 (CDIF104452_01410) | - | 1451022..1452092 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| CDIF104452_RS06965 (CDIF104452_01411) | - | 1452194..1452730 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| CDIF104452_RS06970 (CDIF104452_01412) | - | 1452846..1453553 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| CDIF104452_RS06975 (CDIF104452_01413) | - | 1453555..1454271 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| CDIF104452_RS06980 (CDIF104452_01414) | - | 1454273..1455031 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| CDIF104452_RS06985 (CDIF104452_01415) | - | 1455166..1456554 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| CDIF104452_RS06990 (CDIF104452_01416) | - | 1456630..1457451 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| CDIF104452_RS06995 (CDIF104452_01417) | - | 1457702..1458856 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| CDIF104452_RS07000 (CDIF104452_01418) | - | 1459039..1459239 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| CDIF104452_RS07005 (CDIF104452_01419) | - | 1459660..1460088 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| CDIF104452_RS07010 (CDIF104452_01420) | - | 1460231..1460986 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| CDIF104452_RS07015 (CDIF104452_01422) | - | 1461687..1462193 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| CDIF104452_RS07020 (CDIF104452_01423) | - | 1462275..1462595 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| CDIF104452_RS07025 (CDIF104452_01424) | - | 1462764..1462961 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| CDIF104452_RS07030 (CDIF104452_01425) | - | 1463066..1463506 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| CDIF104452_RS07035 (CDIF104452_01426) | - | 1463755..1464198 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| CDIF104452_RS07040 (CDIF104452_01427) | - | 1464203..1465267 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| CDIF104452_RS07045 (CDIF104452_01428) | - | 1465281..1465709 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=291814 CDIF104452_RS06865 WP_021364420.1 1427027..1428073(+) (recA) [Clostridioides difficile strain DSM 104452]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=291814 CDIF104452_RS06865 WP_021364420.1 1427027..1428073(+) (recA) [Clostridioides difficile strain DSM 104452]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.