Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A1D75_RS20465 Genome accession   NZ_CP034806
Coordinates   3928530..3929267 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain 2010C-3347     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3923530..3934267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1D75_RS20450 clpC 3923984..3926557 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  A1D75_RS20455 yfiH 3926687..3927418 (-) 732 WP_000040152.1 purine nucleoside phosphorylase YfiH -
  A1D75_RS20460 rluD 3927415..3928395 (-) 981 WP_000079092.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A1D75_RS20465 comL 3928530..3929267 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  A1D75_RS20470 raiA 3929538..3929879 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  A1D75_RS20475 pheL 3929983..3930030 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  A1D75_RS20480 pheA 3930129..3931289 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  A1D75_RS20485 tyrA 3931332..3932453 (-) 1122 WP_000225204.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  A1D75_RS20490 aroF 3932464..3933534 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  A1D75_RS20495 yfiL 3933744..3934109 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=291321 A1D75_RS20465 WP_000197686.1 3928530..3929267(+) (comL) [Escherichia coli strain 2010C-3347]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=291321 A1D75_RS20465 WP_000197686.1 3928530..3929267(+) (comL) [Escherichia coli strain 2010C-3347]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment