Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DDG63_RS07110 | Genome accession | NZ_CP029154 |
| Coordinates | 1471539..1472585 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CD161 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1446025..1507801 | 1471539..1472585 | within | 0 |
Gene organization within MGE regions
Location: 1446025..1507801
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDG63_RS07000 (DDG63_07000) | rimP | 1449773..1450234 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| DDG63_RS07005 (DDG63_07005) | nusA | 1450264..1451418 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| DDG63_RS07010 (DDG63_07010) | rnpM | 1451425..1451706 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| DDG63_RS07015 (DDG63_07015) | - | 1451696..1452007 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| DDG63_RS07020 (DDG63_07020) | infB | 1452029..1453969 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| DDG63_RS07025 (DDG63_07025) | rbfA | 1454012..1454392 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| DDG63_RS07030 (DDG63_07030) | - | 1454373..1455356 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| DDG63_RS07035 (DDG63_07035) | truB | 1455369..1456274 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| DDG63_RS07040 (DDG63_07040) | - | 1456405..1457334 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DDG63_RS07050 (DDG63_07050) | rpsO | 1457438..1457695 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| DDG63_RS07055 (DDG63_07055) | - | 1457935..1458786 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| DDG63_RS07060 (DDG63_07060) | pnp | 1458911..1461022 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| DDG63_RS07065 (DDG63_07065) | - | 1461288..1462031 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| DDG63_RS07070 (DDG63_07070) | - | 1462189..1463436 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| DDG63_RS07075 (DDG63_07075) | - | 1463471..1463716 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| DDG63_RS07080 (DDG63_07080) | dapG | 1463726..1464949 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| DDG63_RS07085 (DDG63_07085) | - | 1465062..1465796 (+) | 735 | WP_003433325.1 | ClpP family protease | - |
| DDG63_RS07090 (DDG63_07090) | - | 1465919..1468333 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| DDG63_RS07095 (DDG63_07095) | mnmH | 1468336..1469394 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| DDG63_RS07100 (DDG63_07100) | rimO | 1469388..1470722 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| DDG63_RS07105 (DDG63_07105) | pgsA | 1470709..1471251 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DDG63_RS07110 (DDG63_07110) | recA | 1471539..1472585 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| DDG63_RS07115 (DDG63_07115) | rny | 1472761..1474302 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| DDG63_RS07120 (DDG63_07120) | - | 1474937..1476718 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| DDG63_RS07125 (DDG63_07125) | lepB | 1476800..1477330 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| DDG63_RS07130 (DDG63_07130) | - | 1477370..1478194 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| DDG63_RS07135 (DDG63_07135) | - | 1478451..1479359 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| DDG63_RS07140 (DDG63_07140) | purB | 1479503..1480948 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| DDG63_RS07145 (DDG63_07145) | - | 1481259..1481711 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DDG63_RS07150 (DDG63_07150) | - | 1482115..1483692 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| DDG63_RS07155 (DDG63_07155) | - | 1483840..1484592 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| DDG63_RS07160 (DDG63_07160) | - | 1484731..1486092 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| DDG63_RS07165 (DDG63_07165) | - | 1486183..1487379 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| DDG63_RS07170 (DDG63_07170) | galT | 1487764..1488714 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| DDG63_RS07175 (DDG63_07175) | - | 1488867..1489619 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| DDG63_RS07180 (DDG63_07180) | - | 1489711..1490487 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| DDG63_RS07185 (DDG63_07185) | - | 1490802..1492700 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| DDG63_RS07190 (DDG63_07190) | - | 1492828..1493949 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| DDG63_RS07195 (DDG63_07195) | - | 1494148..1494480 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| DDG63_RS07200 (DDG63_07200) | - | 1494467..1495525 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| DDG63_RS07205 (DDG63_07205) | - | 1495518..1496588 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| DDG63_RS07210 (DDG63_07210) | - | 1496690..1497226 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| DDG63_RS07215 (DDG63_07215) | - | 1497342..1498049 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| DDG63_RS07220 (DDG63_07220) | - | 1498051..1498767 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| DDG63_RS07225 (DDG63_07225) | - | 1498769..1499527 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| DDG63_RS07230 (DDG63_07230) | - | 1499662..1501050 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| DDG63_RS07235 (DDG63_07235) | - | 1501126..1501947 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| DDG63_RS07240 (DDG63_07240) | - | 1502198..1503352 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| DDG63_RS07245 (DDG63_07245) | - | 1503535..1503735 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| DDG63_RS07250 (DDG63_07250) | - | 1504156..1504584 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| DDG63_RS07255 (DDG63_07255) | - | 1504727..1505482 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| DDG63_RS07260 (DDG63_07260) | - | 1505603..1506019 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| DDG63_RS07265 (DDG63_07265) | - | 1506183..1506689 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DDG63_RS07270 (DDG63_07270) | - | 1506771..1507091 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| DDG63_RS07275 (DDG63_07275) | - | 1507260..1507457 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=290809 DDG63_RS07110 WP_003428218.1 1471539..1472585(+) (recA) [Clostridioides difficile strain CD161]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=290809 DDG63_RS07110 WP_003428218.1 1471539..1472585(+) (recA) [Clostridioides difficile strain CD161]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.