Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DDG61_RS07385 | Genome accession | NZ_CP029152 |
| Coordinates | 1512388..1513434 (+) | Length | 348 a.a. |
| NCBI ID | WP_003428218.1 | Uniprot ID | A0A031WFI0 |
| Organism | Clostridioides difficile strain CDT4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1486874..1548650 | 1512388..1513434 | within | 0 |
Gene organization within MGE regions
Location: 1486874..1548650
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DDG61_RS07275 (DDG61_07275) | rimP | 1490622..1491083 (+) | 462 | WP_003428240.1 | ribosome maturation factor RimP | - |
| DDG61_RS07280 (DDG61_07280) | nusA | 1491113..1492267 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| DDG61_RS07285 (DDG61_07285) | rnpM | 1492274..1492555 (+) | 282 | WP_003428236.1 | RNase P modulator RnpM | - |
| DDG61_RS07290 (DDG61_07290) | - | 1492545..1492856 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| DDG61_RS07295 (DDG61_07295) | infB | 1492878..1494818 (+) | 1941 | WP_003428235.1 | translation initiation factor IF-2 | - |
| DDG61_RS07300 (DDG61_07300) | rbfA | 1494861..1495241 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| DDG61_RS07305 (DDG61_07305) | - | 1495222..1496205 (+) | 984 | WP_003428233.1 | DHH family phosphoesterase | - |
| DDG61_RS07310 (DDG61_07310) | truB | 1496218..1497123 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| DDG61_RS07315 (DDG61_07315) | - | 1497254..1498183 (+) | 930 | WP_003428231.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DDG61_RS07325 (DDG61_07325) | rpsO | 1498287..1498544 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| DDG61_RS07330 (DDG61_07330) | - | 1498784..1499635 (+) | 852 | WP_021387801.1 | DegV family protein | - |
| DDG61_RS07335 (DDG61_07335) | pnp | 1499760..1501871 (+) | 2112 | WP_003428229.1 | polyribonucleotide nucleotidyltransferase | - |
| DDG61_RS07340 (DDG61_07340) | - | 1502137..1502880 (+) | 744 | WP_003428228.1 | polysaccharide deacetylase family protein | - |
| DDG61_RS07345 (DDG61_07345) | - | 1503038..1504285 (+) | 1248 | WP_003428227.1 | M16 family metallopeptidase | - |
| DDG61_RS07350 (DDG61_07350) | - | 1504320..1504565 (+) | 246 | WP_003419503.1 | YlmC/YmxH family sporulation protein | - |
| DDG61_RS07355 (DDG61_07355) | dapG | 1504575..1505798 (+) | 1224 | WP_003428226.1 | aspartate kinase | - |
| DDG61_RS07360 (DDG61_07360) | - | 1505911..1506645 (+) | 735 | WP_003433325.1 | ClpP family protease | - |
| DDG61_RS07365 (DDG61_07365) | - | 1506768..1509182 (+) | 2415 | WP_003428223.1 | FtsK/SpoIIIE family DNA translocase | - |
| DDG61_RS07370 (DDG61_07370) | mnmH | 1509185..1510243 (+) | 1059 | WP_003428222.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| DDG61_RS07375 (DDG61_07375) | rimO | 1510237..1511571 (+) | 1335 | WP_003428221.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| DDG61_RS07380 (DDG61_07380) | pgsA | 1511558..1512100 (+) | 543 | WP_021387802.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DDG61_RS07385 (DDG61_07385) | recA | 1512388..1513434 (+) | 1047 | WP_003428218.1 | recombinase RecA | Machinery gene |
| DDG61_RS07390 (DDG61_07390) | rny | 1513610..1515151 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| DDG61_RS07395 (DDG61_07395) | - | 1515786..1517567 (+) | 1782 | WP_003428215.1 | UvrD-helicase domain-containing protein | - |
| DDG61_RS07400 (DDG61_07400) | lepB | 1517649..1518179 (-) | 531 | WP_021387803.1 | signal peptidase I | - |
| DDG61_RS07405 (DDG61_07405) | - | 1518219..1519043 (-) | 825 | WP_009905410.1 | undecaprenyl-diphosphate phosphatase | - |
| DDG61_RS07410 (DDG61_07410) | - | 1519300..1520208 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| DDG61_RS07415 (DDG61_07415) | purB | 1520352..1521797 (+) | 1446 | WP_021387804.1 | adenylosuccinate lyase | - |
| DDG61_RS07420 (DDG61_07420) | - | 1522108..1522560 (+) | 453 | WP_003428210.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DDG61_RS07425 (DDG61_07425) | - | 1522964..1524541 (+) | 1578 | WP_003428209.1 | PTS transporter subunit EIIC | - |
| DDG61_RS07430 (DDG61_07430) | - | 1524689..1525441 (+) | 753 | WP_003428208.1 | MurR/RpiR family transcriptional regulator | - |
| DDG61_RS07435 (DDG61_07435) | - | 1525580..1526941 (+) | 1362 | WP_003428207.1 | 6-phospho-alpha-glucosidase | - |
| DDG61_RS07440 (DDG61_07440) | - | 1527032..1528228 (-) | 1197 | WP_003428206.1 | pyridoxal phosphate-dependent aminotransferase | - |
| DDG61_RS07445 (DDG61_07445) | galT | 1528613..1529563 (+) | 951 | WP_003428205.1 | galactose-1-phosphate uridylyltransferase | - |
| DDG61_RS07450 (DDG61_07450) | - | 1529716..1530468 (+) | 753 | WP_003428204.1 | exodeoxyribonuclease III | - |
| DDG61_RS07455 (DDG61_07455) | - | 1530560..1531336 (-) | 777 | WP_003428203.1 | 3'-5' exonuclease | - |
| DDG61_RS07460 (DDG61_07460) | - | 1531651..1533549 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| DDG61_RS07465 (DDG61_07465) | - | 1533677..1534798 (-) | 1122 | WP_003428201.1 | MGDG synthase family glycosyltransferase | - |
| DDG61_RS07470 (DDG61_07470) | - | 1534997..1535329 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| DDG61_RS07475 (DDG61_07475) | - | 1535316..1536374 (+) | 1059 | WP_003428198.1 | DUF1700 domain-containing protein | - |
| DDG61_RS07480 (DDG61_07480) | - | 1536367..1537437 (+) | 1071 | WP_003428197.1 | DUF4097 family beta strand repeat-containing protein | - |
| DDG61_RS07485 (DDG61_07485) | - | 1537539..1538075 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| DDG61_RS07490 (DDG61_07490) | - | 1538191..1538898 (+) | 708 | WP_021393263.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| DDG61_RS07495 (DDG61_07495) | - | 1538900..1539616 (+) | 717 | WP_003428194.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| DDG61_RS07500 (DDG61_07500) | - | 1539618..1540376 (+) | 759 | WP_021427419.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| DDG61_RS07505 (DDG61_07505) | - | 1540511..1541899 (+) | 1389 | WP_021387809.1 | two-component system sensor histidine kinase | - |
| DDG61_RS07510 (DDG61_07510) | - | 1541975..1542796 (-) | 822 | WP_003428191.1 | pyridoxamine kinase | - |
| DDG61_RS07515 (DDG61_07515) | - | 1543047..1544201 (+) | 1155 | WP_021427410.1 | amidase domain-containing protein | - |
| DDG61_RS07520 (DDG61_07520) | - | 1544384..1544584 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| DDG61_RS07525 (DDG61_07525) | - | 1545005..1545433 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| DDG61_RS07530 (DDG61_07530) | - | 1545576..1546331 (-) | 756 | WP_021387811.1 | peptidylprolyl isomerase | - |
| DDG61_RS07535 (DDG61_07535) | - | 1546452..1546868 (-) | 417 | WP_003428188.1 | hypothetical protein | - |
| DDG61_RS07540 (DDG61_07540) | - | 1547032..1547538 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DDG61_RS07545 (DDG61_07545) | - | 1547620..1547940 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| DDG61_RS07550 (DDG61_07550) | - | 1548109..1548306 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37377.68 Da Isoelectric Point: 4.8236
>NTDB_id=290793 DDG61_RS07385 WP_003428218.1 1512388..1513434(+) (recA) [Clostridioides difficile strain CDT4]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGTSVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=290793 DDG61_RS07385 WP_003428218.1 1512388..1513434(+) (recA) [Clostridioides difficile strain CDT4]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAGACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGACAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCAGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGACACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGGATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAGGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTACTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
Similar proteins
Only experimentally validated proteins are listed.