Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DBX24_RS05090 Genome accession   NZ_CP029149
Coordinates   1102975..1104009 (-) Length   344 a.a.
NCBI ID   WP_160224155.1    Uniprot ID   A0A6P1QUV8
Organism   Bergeyella cardium strain HPQL     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097975..1109009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX24_RS05065 (DBX24_05065) - 1098194..1098586 (+) 393 WP_120489767.1 FdtA/QdtA family cupin domain-containing protein -
  DBX24_RS05070 (DBX24_05070) - 1098651..1099088 (-) 438 WP_120489766.1 hypothetical protein -
  DBX24_RS05075 (DBX24_05075) - 1099099..1100727 (-) 1629 WP_160224154.1 ABC-F family ATP-binding cassette domain-containing protein -
  DBX24_RS05080 (DBX24_05080) smpB 1100830..1101288 (+) 459 WP_120489764.1 SsrA-binding protein SmpB -
  DBX24_RS05085 (DBX24_05085) - 1101365..1102831 (+) 1467 WP_120489763.1 OmpA family protein -
  DBX24_RS05090 (DBX24_05090) recA 1102975..1104009 (-) 1035 WP_160224155.1 recombinase RecA Machinery gene
  DBX24_RS05095 (DBX24_05095) - 1104213..1104845 (-) 633 WP_160224156.1 7-carboxy-7-deazaguanine synthase QueE -
  DBX24_RS05100 (DBX24_05100) - 1104894..1105781 (-) 888 WP_120489760.1 bifunctional 5,10-methylenetetrahydrofolate dehydrogenase/5,10-methenyltetrahydrofolate cyclohydrolase -
  DBX24_RS05105 (DBX24_05105) ytxJ 1105931..1106263 (+) 333 WP_160224157.1 bacillithiol system redox-active protein YtxJ -
  DBX24_RS05110 (DBX24_05110) - 1106612..1107343 (-) 732 WP_160224159.1 YebC/PmpR family DNA-binding transcriptional regulator -
  DBX24_RS05115 (DBX24_05115) - 1107374..1108114 (-) 741 WP_160224160.1 uroporphyrinogen-III synthase -
  DBX24_RS05120 (DBX24_05120) - 1108123..1108767 (-) 645 WP_160224162.1 DUF4271 domain-containing protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36913.35 Da        Isoelectric Point: 6.1805

>NTDB_id=290740 DBX24_RS05090 WP_160224155.1 1102975..1104009(-) (recA) [Bergeyella cardium strain HPQL]
MASETKKTTEKPEKVDDKKKALALVLEKLDKTYGKGTVMKLGDSSIDSSIEVIPSGSLGLDIALGIGGYPKGRIIEIFGP
ESSGKTTLTLHAIAEAQKQGGTAAFIDAEHAFDRSYAGKLGIDLDELIISQPDNGEQALEIADNLIRSGAIDLVVIDSVA
ALTPKSEIEGEMGDSKVGLHARLMSQALRKLTSTISKTKCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRIDIRK
AAAPIKQGEEAIGSRVKVKIVKNKVAPPFKQAEFDIMYGEGVSKAGEILDHAVELNIVKKSGAWFSYGDTKLGQGRDTVK
DLIKDNPELSEELEAQIKEALANK

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=290740 DBX24_RS05090 WP_160224155.1 1102975..1104009(-) (recA) [Bergeyella cardium strain HPQL]
ATGGCTTCAGAAACTAAAAAAACTACCGAAAAACCTGAAAAGGTAGATGATAAAAAGAAAGCACTAGCTCTGGTGCTCGA
AAAATTAGACAAAACTTACGGCAAAGGTACCGTAATGAAATTGGGCGATAGCTCTATTGATTCCTCCATAGAAGTGATAC
CTTCGGGTTCGCTGGGGTTAGATATTGCCCTTGGCATCGGAGGCTATCCTAAGGGGAGGATTATTGAAATCTTTGGTCCA
GAATCTTCTGGTAAGACTACTCTTACACTCCACGCGATTGCCGAAGCCCAGAAACAAGGAGGCACGGCTGCTTTTATAGA
TGCCGAGCACGCATTTGACAGGAGCTATGCTGGTAAGCTCGGTATTGACTTGGATGAGCTCATCATCTCCCAGCCAGACA
ATGGCGAGCAGGCACTGGAAATAGCCGATAACCTCATCCGCTCTGGAGCTATTGACCTTGTGGTAATAGACTCAGTGGCT
GCCCTTACCCCAAAATCCGAAATTGAAGGAGAAATGGGAGATTCCAAAGTAGGACTCCACGCAAGGCTGATGTCTCAGGC
ATTGAGAAAGCTGACATCTACCATTTCCAAGACGAAATGTACCGTAATTTTCATCAACCAGCTAAGGGAAAAAATCGGGG
TAATGTTTGGAAATCCTGAAACAACAACAGGTGGTAATGCACTTAAATTCTATGCTTCGGTAAGGATTGATATTAGAAAA
GCTGCAGCTCCTATCAAACAAGGTGAAGAAGCTATCGGAAGCCGAGTGAAAGTAAAAATTGTGAAAAATAAAGTTGCCCC
TCCATTTAAGCAAGCAGAATTTGATATTATGTATGGAGAGGGAGTTTCTAAAGCAGGAGAAATACTTGACCATGCTGTAG
AGCTCAATATCGTAAAGAAAAGTGGTGCATGGTTTAGCTATGGAGATACTAAACTCGGGCAAGGTAGAGATACAGTAAAA
GACCTTATTAAAGATAACCCCGAGCTCTCTGAAGAATTAGAAGCTCAGATTAAAGAAGCATTAGCGAATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(20-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6P1QUV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

80.059

99.128

0.794
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.549

95.349

0.625
  recA Acinetobacter baylyi ADP1

64.438

95.64

0.616
  recA Glaesserella parasuis strain SC1401

61.696

99.419

0.613
  recA Helicobacter pylori strain NCTC11637

63.83

95.64

0.61
  recA Helicobacter pylori 26695

63.526

95.64

0.608
  recA Acinetobacter baumannii D1279779

63.804

94.767

0.605
  recA Neisseria gonorrhoeae MS11

64.396

93.895

0.605
  recA Neisseria gonorrhoeae MS11

64.396

93.895

0.605
  recA Neisseria gonorrhoeae strain FA1090

64.396

93.895

0.605
  recA Streptococcus mitis SK321

59.767

99.709

0.596
  recA Streptococcus mitis NCTC 12261

59.767

99.709

0.596
  recA Streptococcus pneumoniae D39

59.475

99.709

0.593
  recA Streptococcus pneumoniae TIGR4

59.475

99.709

0.593
  recA Bacillus subtilis subsp. subtilis str. 168

62.769

94.477

0.593
  recA Streptococcus pneumoniae Rx1

59.475

99.709

0.593
  recA Streptococcus pneumoniae R6

59.475

99.709

0.593
  recA Streptococcus pyogenes NZ131

59.184

99.709

0.59
  recA Pseudomonas stutzeri DSM 10701

61.963

94.767

0.587
  recA Ralstonia pseudosolanacearum GMI1000

64.217

90.988

0.584
  recA Streptococcus mutans UA159

58.187

99.419

0.578
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.366

95.349

0.576
  recA Vibrio cholerae strain A1552

60.366

95.349

0.576
  recA Lactococcus lactis subsp. cremoris KW2

60.061

95.349

0.573
  recA Latilactobacillus sakei subsp. sakei 23K

58.769

94.477

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.263

99.419

0.549

Multiple sequence alignment