Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BTJ40_RS16325 Genome accession   NZ_CP029064
Coordinates   3708649..3709683 (-) Length   344 a.a.
NCBI ID   WP_108735301.1    Uniprot ID   -
Organism   Microbulbifer sp. A4B17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3703649..3714683
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BTJ40_RS16295 (BTJ40_16295) - 3703983..3704330 (-) 348 WP_108734084.1 histidine triad nucleotide-binding protein -
  BTJ40_RS16300 (BTJ40_16300) - 3704335..3704520 (-) 186 WP_108734085.1 Trm112 family protein -
  BTJ40_RS16305 (BTJ40_16305) - 3704653..3705492 (-) 840 WP_157954123.1 alpha/beta hydrolase -
  BTJ40_RS16310 (BTJ40_16310) - 3705525..3706535 (-) 1011 WP_108734087.1 class I fructose-bisphosphate aldolase -
  BTJ40_RS16315 (BTJ40_16315) glpK 3706584..3708062 (-) 1479 WP_108734088.1 glycerol kinase GlpK -
  BTJ40_RS16320 (BTJ40_16320) - 3708163..3708648 (-) 486 WP_108734089.1 regulatory protein RecX -
  BTJ40_RS16325 (BTJ40_16325) recA 3708649..3709683 (-) 1035 WP_108735301.1 recombinase RecA Machinery gene
  BTJ40_RS16330 (BTJ40_16330) - 3709857..3710369 (-) 513 WP_238152032.1 CinA family protein -
  BTJ40_RS16335 (BTJ40_16335) - 3711061..3713094 (+) 2034 WP_108734091.1 glycoside hydrolase family 16 protein -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 37074.36 Da        Isoelectric Point: 4.9542

>NTDB_id=289798 BTJ40_RS16325 WP_108735301.1 3708649..3709683(-) (recA) [Microbulbifer sp. A4B17]
MDSNKDKALKAALSQIERQFGKGTVMRMGDKERERIPAISTGSLGLDVALGIGGLPRGRIVEIYGPESSGKTTLTLQVIA
EAQRNGGTCAFVDAEHALDPIYAEKLGVNVDELIVSQPDTGEQALEVADMLVRSGAVDVLVVDSVAALTPRAEIEGEMGD
SHVGLQARLMSQALRKLTGNIKNTNTLAIFINQIRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRIGSVKDGDEVVGNE
TRVKVVKNKVAPPFKQTEFQIMYGEGINMIGEIVDYGVKMGLVDKAGAWYSYKGDKIGQGKANATKFLRDNPDIRNEIEG
QLRAQLLGDLVPATPEEAAELPEE

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=289798 BTJ40_RS16325 WP_108735301.1 3708649..3709683(-) (recA) [Microbulbifer sp. A4B17]
ATGGATTCCAATAAAGACAAGGCACTAAAGGCGGCGTTATCTCAGATTGAACGTCAGTTCGGTAAAGGTACTGTGATGCG
TATGGGAGATAAGGAGCGCGAGCGTATCCCTGCAATCTCCACCGGCTCCCTCGGCTTGGATGTGGCCCTGGGAATAGGCG
GCCTGCCGCGCGGCCGTATTGTTGAAATCTATGGACCTGAATCTTCCGGTAAGACCACCCTAACCCTGCAGGTGATTGCC
GAGGCCCAGCGCAACGGCGGTACCTGTGCTTTCGTAGATGCTGAGCATGCCCTCGACCCTATCTACGCTGAAAAACTGGG
TGTTAATGTCGATGAGCTGATCGTATCCCAGCCGGATACCGGTGAGCAGGCGTTGGAAGTAGCTGATATGCTGGTGCGTT
CCGGTGCTGTTGATGTACTGGTAGTGGACTCTGTAGCGGCCCTGACCCCGCGCGCTGAGATCGAAGGTGAAATGGGTGAC
TCCCACGTCGGCTTACAGGCTCGCCTGATGTCCCAGGCTCTGCGTAAGCTCACTGGTAATATCAAGAACACCAATACGCT
GGCGATCTTTATCAACCAGATCCGTATGAAGATCGGTGTTATGTTCGGCAGCCCCGAAACCACTACTGGTGGTAACGCCC
TCAAATTCTACTCCTCTGTGCGTCTGGATATCCGTCGTATCGGTTCCGTTAAAGACGGCGATGAAGTAGTGGGCAACGAA
ACTCGAGTGAAAGTCGTTAAGAACAAGGTAGCTCCTCCGTTCAAACAGACCGAGTTCCAGATCATGTATGGTGAAGGCAT
CAACATGATTGGTGAGATTGTCGATTACGGTGTGAAGATGGGGCTGGTGGATAAAGCCGGGGCCTGGTACAGCTACAAGG
GCGATAAGATCGGTCAGGGCAAGGCAAACGCCACCAAGTTCCTGCGCGATAACCCCGATATTCGCAATGAGATTGAAGGC
CAGCTGCGCGCGCAGCTGCTCGGTGATTTAGTCCCGGCCACTCCTGAAGAGGCTGCGGAATTACCGGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

80.428

95.058

0.765
  recA Acinetobacter baylyi ADP1

74.006

95.058

0.703
  recA Acinetobacter baumannii D1279779

73.7

95.058

0.701
  recA Vibrio cholerae strain A1552

73.089

95.058

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.058

0.695
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae MS11

72.308

94.477

0.683
  recA Neisseria gonorrhoeae strain FA1090

72.308

94.477

0.683
  recA Ralstonia pseudosolanacearum GMI1000

71.125

95.64

0.68
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.398

92.733

0.625
  recA Helicobacter pylori strain NCTC11637

61.449

100

0.616
  recA Helicobacter pylori 26695

61.449

100

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

65.421

93.314

0.61
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.142

96.221

0.608
  recA Latilactobacillus sakei subsp. sakei 23K

63.125

93.023

0.587
  recA Streptococcus mutans UA159

61.846

94.477

0.584
  recA Streptococcus mitis NCTC 12261

60.976

95.349

0.581
  recA Streptococcus mitis SK321

60.671

95.349

0.578
  recA Streptococcus pneumoniae Rx1

60.366

95.349

0.576
  recA Streptococcus pneumoniae D39

60.366

95.349

0.576
  recA Streptococcus pneumoniae R6

60.366

95.349

0.576
  recA Streptococcus pneumoniae TIGR4

60.366

95.349

0.576
  recA Streptococcus pyogenes NZ131

60.185

94.186

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.752

93.895

0.561
  recA Lactococcus lactis subsp. cremoris KW2

57.927

95.349

0.552

Multiple sequence alignment