Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCO55_RS08495 Genome accession   NZ_CP029053
Coordinates   1623330..1624361 (-) Length   343 a.a.
NCBI ID   WP_052817457.1    Uniprot ID   -
Organism   Campylobacter jejuni strain c021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1618330..1629361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO55_RS08440 (DCO55_08545) - 1618499..1618936 (-) 438 WP_044261756.1 DUF411 domain-containing protein -
  DCO55_RS08445 (DCO55_08550) - 1619220..1619660 (-) 441 WP_134237454.1 hypothetical protein -
  DCO55_RS08475 (DCO55_08580) - 1620317..1621165 (-) 849 WP_044261758.1 DNA ligase -
  DCO55_RS08480 (DCO55_08585) cgpA 1621165..1621827 (-) 663 WP_002867529.1 glycoprotein CgpA -
  DCO55_RS08485 (DCO55_08590) - 1621817..1622020 (-) 204 WP_002839177.1 hypothetical protein -
  DCO55_RS08490 (DCO55_08595) eno 1622086..1623330 (-) 1245 WP_052817455.1 phosphopyruvate hydratase -
  DCO55_RS08495 (DCO55_08600) recA 1623330..1624361 (-) 1032 WP_052817457.1 recombinase RecA Machinery gene
  DCO55_RS08500 (DCO55_08605) - 1624468..1625328 (+) 861 WP_032584517.1 menaquinone biosynthesis family protein -
  DCO55_RS08505 (DCO55_08610) fliQ 1625340..1625609 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  DCO55_RS08510 (DCO55_08615) murB 1625606..1626382 (+) 777 WP_002937447.1 UDP-N-acetylmuramate dehydrogenase -
  DCO55_RS08515 (DCO55_08620) - 1626405..1627175 (-) 771 WP_167843282.1 hypothetical protein -
  DCO55_RS08520 (DCO55_08625) cysQ 1627215..1627979 (-) 765 WP_087695625.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  DCO55_RS08525 (DCO55_08630) gltA 1628060..1629328 (-) 1269 WP_057031562.1 citrate synthase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37063.30 Da        Isoelectric Point: 4.9784

>NTDB_id=289730 DCO55_RS08495 WP_052817457.1 1623330..1624361(-) (recA) [Campylobacter jejuni strain c021]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIIDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=289730 DCO55_RS08495 WP_052817457.1 1623330..1624361(-) (recA) [Campylobacter jejuni strain c021]
ATGGATGATAATAAAAGAAAATCTCTAGATGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATTTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGGCTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGACCTGAAAGTTCAGGTAAAACCACTCTAACTTTACATATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACATGCGCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAGCCTGATTTTGGAGAACAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGCGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACTCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
AGTAATTTTCATCAACCAAATTCGTATGAAAATTGGTGCTATGGGTTATGGCACTCCTGAAACTACAACAGGTGGAAATG
CATTAAAATTCTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCGTTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTTAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGCCGTGAAGGTGAATTGATTGATTATGGTGTAAAACTTGATATCATAGATAAAAGTGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAACTCAAAGGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCGATTCAAAATTCTATGGGAATAGAAGGCATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

78.963

95.627

0.755
  recA Helicobacter pylori strain NCTC11637

78.659

95.627

0.752
  recA Neisseria gonorrhoeae MS11

65.396

99.417

0.65
  recA Neisseria gonorrhoeae MS11

65.396

99.417

0.65
  recA Neisseria gonorrhoeae strain FA1090

65.396

99.417

0.65
  recA Acinetobacter baylyi ADP1

62.682

100

0.627
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.157

96.793

0.621
  recA Glaesserella parasuis strain SC1401

65.337

95.044

0.621
  recA Pseudomonas stutzeri DSM 10701

64.526

95.335

0.615
  recA Acinetobacter baumannii D1279779

61.516

100

0.615
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.198

94.461

0.606
  recA Vibrio cholerae strain A1552

64.198

94.461

0.606
  recA Bacillus subtilis subsp. subtilis str. 168

63.609

95.335

0.606
  recA Ralstonia pseudosolanacearum GMI1000

63.415

95.627

0.606
  recA Streptococcus pneumoniae Rx1

59.118

99.125

0.586
  recA Streptococcus pneumoniae D39

59.118

99.125

0.586
  recA Streptococcus pneumoniae R6

59.118

99.125

0.586
  recA Streptococcus pneumoniae TIGR4

59.118

99.125

0.586
  recA Streptococcus mitis SK321

57.941

99.125

0.574
  recA Streptococcus mitis NCTC 12261

59.271

95.918

0.569
  recA Streptococcus pyogenes NZ131

59.091

96.21

0.569
  recA Latilactobacillus sakei subsp. sakei 23K

59.327

95.335

0.566
  recA Streptococcus mutans UA159

58.006

96.501

0.56
  recA Lactococcus lactis subsp. cremoris KW2

57.751

95.918

0.554
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.494

92.128

0.548

Multiple sequence alignment