Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EJF26_RS01370 Genome accession   NZ_CP034442
Coordinates   259000..260748 (+) Length   582 a.a.
NCBI ID   WP_001254285.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. dentisani strain F0392     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 254000..265748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJF26_RS01350 - 254019..255305 (+) 1287 WP_000216358.1 homoserine dehydrogenase -
  EJF26_RS01355 thrB 255307..256176 (+) 870 WP_000692413.1 homoserine kinase -
  EJF26_RS01360 msrB 256275..257213 (+) 939 WP_000818212.1 peptide-methionine (R)-S-oxide reductase MsrB -
  EJF26_RS01365 - 257274..258998 (+) 1725 WP_000681676.1 ABC transporter ATP-binding protein -
  EJF26_RS01370 rcrQ 259000..260748 (+) 1749 WP_001254285.1 ABC transporter ATP-binding protein Regulator
  EJF26_RS01375 - 260849..262108 (+) 1260 WP_000870424.1 TRZ/ATZ family protein -
  EJF26_RS01385 rplJ 262346..262846 (+) 501 WP_001287274.1 50S ribosomal protein L10 -
  EJF26_RS01390 rplL 262921..263286 (+) 366 WP_001196968.1 50S ribosomal protein L7/L12 -
  EJF26_RS01395 - 263659..264225 (+) 567 WP_000443018.1 hypothetical protein -
  EJF26_RS01400 gdhA 264247..265593 (-) 1347 WP_000199571.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 64720.15 Da        Isoelectric Point: 8.0906

>NTDB_id=289730 EJF26_RS01370 WP_001254285.1 259000..260748(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
MRRQTANQTLKRLAKDLASHPFLLFLAFLGTISQVGLSIYLPILIGQVIDQVLVAGSSPVFWQIFLQMILVVIGNTLVQW
ANPLLYNRLIFSYTKDLRERIIHKLHRLPIAFVDRQGSGEMVSRVTTDIEQLAAGLTMIFNQFFIGVLMILVSILAMLQI
HLLMTLLVLLLTPLSMVISRFIAKRSYHLFQKQTETRGIQTQLIEESLSQQTIIQSFNAQGEFIQRLHEANDNYAGYSQS
AIFYSSTVNPSTRFVNALIYALLAGVGAYRIMMGSTLTIGRLVTFLNYVQQYTKPFNDISSVLAELQSALACAERVYAVL
ESPEVVETGKEVLTSDQVKGAISFKHVSFGYNPERILIKDLSIDIPAGSKVAIVGPTGAGKSTLINLLMRFHPINSGDIL
LDGHSIYDYTRASLRQQFGMVLQETWLKQGTIHDNIAFGNPEASREQVTAAAKAANADFFIQQLPQGYDTKLENAGESLS
VGQAQLLTIARVFLAIPKILILDEATSSIDTRTEVLVQDAFAKLMKGRTSFIIAHRLSTIQDADLILVLVDGDIVEYGNH
QDLMARKGKYYQMQKAAAFSSE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=289730 EJF26_RS01370 WP_001254285.1 259000..260748(+) (rcrQ) [Streptococcus oralis subsp. dentisani strain F0392]
ATGAGACGACAAACCGCGAACCAGACTCTCAAACGTTTGGCTAAAGATCTTGCAAGTCATCCTTTCCTCCTTTTCCTAGC
CTTTCTAGGAACTATTTCCCAAGTTGGCTTATCAATCTATCTACCTATTCTGATCGGGCAGGTCATTGACCAGGTCCTGG
TGGCTGGTTCTTCACCAGTTTTTTGGCAGATTTTTCTCCAGATGATCTTGGTGGTAATAGGAAATACTCTGGTACAATGG
GCCAATCCTCTCCTCTATAATCGCCTAATCTTCTCTTATACCAAAGACTTGCGAGAGCGAATCATCCATAAGCTCCATCG
TTTACCGATTGCTTTTGTAGATAGGCAGGGCAGTGGGGAGATGGTTAGTCGTGTGACCACGGACATAGAACAGTTGGCAG
CTGGCTTGACCATGATTTTTAACCAATTTTTCATTGGTGTCTTGATGATTTTGGTTAGTATTCTAGCAATGCTCCAAATT
CACCTCCTCATGACCCTATTGGTTTTGCTGTTGACGCCACTATCCATGGTGATTTCACGCTTTATTGCCAAACGCTCTTA
TCATCTCTTCCAGAAGCAAACAGAAACCAGGGGAATTCAGACTCAGTTGATTGAAGAATCGCTTAGCCAACAGACCATTA
TCCAGTCCTTTAATGCTCAAGGAGAGTTTATCCAAAGATTGCATGAGGCAAATGACAACTACGCAGGTTATTCTCAGTCA
GCCATCTTTTATTCATCAACGGTCAATCCTTCGACTCGCTTTGTAAATGCACTCATTTACGCGCTTTTAGCTGGAGTGGG
AGCTTATCGTATCATGATGGGGTCCACCTTGACCATTGGGCGTTTAGTGACCTTTTTGAACTATGTCCAGCAGTACACCA
AGCCCTTTAACGATATTTCTTCAGTTCTAGCTGAGTTGCAAAGTGCTCTCGCTTGCGCAGAGCGTGTCTATGCTGTCTTA
GAAAGTCCTGAGGTTGTTGAAACAGGTAAGGAAGTCTTGACCAGTGACCAAGTGAAGGGAGCCATTTCCTTTAAGCATGT
TTCTTTTGGATACAATCCTGAAAGGATCTTGATTAAGGATTTGTCTATCGATATCCCAGCTGGTAGCAAGGTAGCCATCG
TTGGTCCGACAGGTGCTGGTAAGTCAACTCTTATCAATCTCCTCATGCGTTTTCATCCTATTAACTCGGGAGATATCTTG
CTAGACGGTCACTCGATTTATGACTATACCCGAGCATCATTGAGGCAGCAGTTTGGCATGGTGCTCCAAGAAACCTGGCT
CAAGCAAGGAACCATTCATGACAATATTGCCTTTGGAAATCCTGAAGCCAGTCGGGAGCAGGTGACTGCTGCTGCCAAAG
CAGCCAACGCAGACTTTTTTATCCAACAGTTGCCACAGGGCTATGATACCAAGTTGGAAAATGCAGGAGAATCTCTATCT
GTCGGTCAAGCCCAGCTCTTGACCATCGCCCGAGTTTTTCTGGCTATACCAAAGATTCTTATCTTAGACGAGGCGACTTC
CTCCATTGATACACGGACGGAAGTGCTAGTTCAGGATGCCTTTGCTAAACTCATGAAGGGGCGCACAAGCTTTATCATTG
CTCACCGTTTGTCAACTATTCAGGATGCGGATTTGATTCTAGTTTTGGTGGATGGTGATATTGTTGAGTATGGCAATCAT
CAGGACCTCATGGCTAGAAAGGGCAAGTATTACCAAATGCAAAAAGCAGCTGCTTTTAGCTCTGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(359-507)

ABC transporter transmembrane region (ABC_membrane)

(24-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

37.258

97.766

0.364

Multiple sequence alignment