Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCO17_RS09210 Genome accession   NZ_CP028942
Coordinates   1807017..1808108 (-) Length   363 a.a.
NCBI ID   WP_173956424.1    Uniprot ID   A0A6M9PYV4
Organism   Polynucleobacter tropicus strain MWH-UH21B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1802017..1813108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO17_RS09180 (DCO17_09130) - 1802596..1802724 (+) 129 Protein_1796 cyclic pyranopterin monophosphate synthase MoaC -
  DCO17_RS09185 (DCO17_09135) - 1802779..1803297 (-) 519 WP_173956419.1 pilin -
  DCO17_RS09190 (DCO17_09140) - 1803441..1804148 (-) 708 WP_173956420.1 TerC family protein -
  DCO17_RS09195 (DCO17_09145) sucD 1804234..1805127 (-) 894 WP_173956421.1 succinate--CoA ligase subunit alpha -
  DCO17_RS09200 (DCO17_09150) sucC 1805143..1806312 (-) 1170 WP_173956422.1 ADP-forming succinate--CoA ligase subunit beta -
  DCO17_RS09205 (DCO17_09155) recX 1806500..1807012 (-) 513 WP_173956423.1 recombination regulator RecX -
  DCO17_RS09210 (DCO17_09160) recA 1807017..1808108 (-) 1092 WP_173956424.1 recombinase RecA Machinery gene
  DCO17_RS09215 (DCO17_09165) - 1808228..1808761 (-) 534 WP_173956425.1 DUF2878 domain-containing protein -
  DCO17_RS09225 (DCO17_09175) - 1808968..1809249 (+) 282 WP_173956426.1 DUF6150 family protein -
  DCO17_RS09230 (DCO17_09180) - 1809274..1809885 (+) 612 WP_173956427.1 MOSC domain-containing protein -
  DCO17_RS09235 (DCO17_09185) - 1809956..1811626 (-) 1671 WP_173956428.1 MFS transporter -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38835.35 Da        Isoelectric Point: 4.7801

>NTDB_id=288712 DCO17_RS09210 WP_173956424.1 1807017..1808108(-) (recA) [Polynucleobacter tropicus strain MWH-UH21B]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYAGKLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVVD
SVAALVPKAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDN
VREFLKENPEIAKDIEAKIREKLGVKAGSAVVTDVLGEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=288712 DCO17_RS09210 WP_173956424.1 1807017..1808108(-) (recA) [Polynucleobacter tropicus strain MWH-UH21B]
ATGGCCTTGGATGATAAAAGAAAGTCAGCCTCTTCGGAGTTTGAAGGCATGAGTGGAGACAAGCAAAAGGCGCTAACAGC
AGCTTTAGCGCAAATTGAGAAGCAGTTTGGTAAAGGCTCAATCATGAGATTGGGCGATGCTGAAATTAGTCAAGATATTC
AGGTGGTATCCAGCGGTTCTCTAGGTTTGGATATCGCACTCGGAGTTGGCGGACTTGCGCGTGGTCGCGTGATTGAAATT
TACGGACCTGAGTCATCCGGCAAAACCACTTTAACTTTGCATGCAATCGCAGAAATGCAAAAGCTTGGTGGCACCTGTGC
GTTTATTGATGCTGAACATGCGTTAGATGTTCAGTACGCTGGTAAGTTGGGTGTTGATGTAAATAATTTATTAATCTCTC
AACCTGATACTGGTGAGCAAGCTTTGGAAATTGCAGACGCATTAGTGCGTTCTGGTTCGATTGATTTAATCGTGGTTGAC
TCGGTTGCTGCATTGGTTCCGAAAGCCGAGATTGAAGGCGACATGGGCGATTCTTTGCCAGGTTTGCAAGCTCGTTTGAT
GAGTCAAGCATTGCGCAAATTAACCGGCGCAATTAAGCGTACGAATACAACCGTCATCTTCATTAACCAGATTCGTATGA
AGATTGGTGTGATGTTTGGTTCTCCAGAAACGACTACTGGCGGTAACGCCTTGAAGTTCTATGCTTCTATGCGTTTGGAT
ATTCGTCGTATTGGTAGCATCAAGAAAGGCGATGAAGTTGTTGGTAATGAAACTCGCGTGAAAGTCGTGAAGAATAAGGT
TTCCCCGCCTTTCCGTGAAGCTATTTTCGACATCATGTATGGCGCCGGTATCTCGAGAGAGGGTGAGATTATTGATATGG
GCGTCGAAGCCGATATTGTTGAAAAATCGGGTTCTTGGTATAGCTATAACGGCGATCGTATTGGTCAAGGTAAAGATAAT
GTGCGCGAGTTCTTGAAAGAGAATCCAGAAATCGCCAAAGACATCGAAGCAAAAATTCGCGAGAAATTAGGCGTTAAAGC
TGGATCTGCTGTAGTGACAGATGTTCTAGGCGAGGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9PYV4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.78

98.898

0.799
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae MS11

74.848

90.909

0.68
  recA Neisseria gonorrhoeae strain FA1090

74.848

90.909

0.68
  recA Acinetobacter baylyi ADP1

70.93

94.766

0.672
  recA Acinetobacter baumannii D1279779

70.64

94.766

0.669
  recA Pseudomonas stutzeri DSM 10701

70.501

93.388

0.658
  recA Vibrio cholerae O1 biovar El Tor strain E7946

71.865

90.083

0.647
  recA Vibrio cholerae strain A1552

71.865

90.083

0.647
  recA Glaesserella parasuis strain SC1401

69.789

91.185

0.636
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.789

94.215

0.62
  recA Bacillus subtilis subsp. subtilis str. 168

68.712

89.807

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.535

94.766

0.612
  recA Helicobacter pylori 26695

67.178

89.807

0.603
  recA Helicobacter pylori strain NCTC11637

66.871

89.807

0.601
  recA Streptococcus pneumoniae D39

61.012

92.562

0.565
  recA Streptococcus pneumoniae Rx1

61.012

92.562

0.565
  recA Streptococcus pneumoniae R6

61.012

92.562

0.565
  recA Streptococcus pneumoniae TIGR4

61.012

92.562

0.565
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Streptococcus mutans UA159

59.13

95.041

0.562
  recA Streptococcus mitis NCTC 12261

60.119

92.562

0.556
  recA Streptococcus mitis SK321

60.606

90.909

0.551
  recA Streptococcus pyogenes NZ131

59.878

90.634

0.543
  recA Lactococcus lactis subsp. cremoris KW2

59.394

90.909

0.54
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.059

88.43

0.54

Multiple sequence alignment