Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCO16_RS09860 Genome accession   NZ_CP028941
Coordinates   1911961..1913055 (-) Length   364 a.a.
NCBI ID   WP_173943867.1    Uniprot ID   A0A6M9PTW0
Organism   Polynucleobacter antarcticus strain LimPoW16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906961..1918055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCO16_RS09830 (DCO16_09805) moaC 1907158..1907634 (+) 477 WP_173943473.1 cyclic pyranopterin monophosphate synthase MoaC -
  DCO16_RS09835 (DCO16_09810) - 1907740..1908267 (-) 528 WP_173943474.1 pilin -
  DCO16_RS09840 (DCO16_09815) - 1908389..1909096 (-) 708 WP_173943475.1 TerC family protein -
  DCO16_RS09845 (DCO16_09820) sucD 1909182..1910075 (-) 894 WP_173943476.1 succinate--CoA ligase subunit alpha -
  DCO16_RS09850 (DCO16_09825) sucC 1910094..1911260 (-) 1167 WP_173943477.1 ADP-forming succinate--CoA ligase subunit beta -
  DCO16_RS09855 (DCO16_09830) - 1911420..1911953 (-) 534 WP_173943478.1 regulatory protein RecX -
  DCO16_RS09860 (DCO16_09835) recA 1911961..1913055 (-) 1095 WP_173943867.1 recombinase RecA Machinery gene
  DCO16_RS09865 (DCO16_09840) - 1913175..1913711 (-) 537 WP_173943479.1 DUF2878 domain-containing protein -
  DCO16_RS09870 (DCO16_09845) - 1913731..1914384 (-) 654 WP_173943480.1 VTT domain-containing protein -
  DCO16_RS09875 (DCO16_09850) - 1914403..1915662 (-) 1260 WP_173943481.1 putative Na+/H+ antiporter -
  DCO16_RS09880 (DCO16_09855) - 1915810..1917714 (+) 1905 WP_173943482.1 DUF294 nucleotidyltransferase-like domain-containing protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 39017.49 Da        Isoelectric Point: 4.8874

>NTDB_id=288700 DCO16_RS09860 WP_173943867.1 1911961..1913055(-) (recA) [Polynucleobacter antarcticus strain LimPoW16]
MDDKKKSASSEFDGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEIHQDIQVVSSGSLGLDIALGVGGLARGRVIEIYG
PESSGKTTLTLHAIAEMQKIGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEITDALVRSGSIDLIVIDSV
AALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLDIR
RIGGIKKGDEIVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVEKSGSWYSYNGDRIGQGKDNVR
DFLKENPAISQDIEAKIRAKLGVKSGTAIVSDVVNDVLSEEEEV

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=288700 DCO16_RS09860 WP_173943867.1 1911961..1913055(-) (recA) [Polynucleobacter antarcticus strain LimPoW16]
ATGGATGATAAGAAAAAATCAGCCTCATCAGAGTTTGATGGGATGAGTGGAGACAAGCAAAAAGCCTTGACGGCAGCTTT
GGCGCAAATTGAGAAGCAATTTGGCAAGGGCTCGATCATGAGATTGGGCGACGCAGAGATCCATCAAGATATTCAAGTGG
TATCCAGTGGATCACTGGGTTTAGATATTGCTTTGGGAGTGGGTGGTTTAGCTCGTGGGCGCGTGATTGAGATTTACGGC
CCTGAGTCCTCAGGAAAAACAACCTTAACTTTGCATGCTATTGCAGAGATGCAAAAAATTGGTGGGACTTGCGCCTTTAT
CGATGCTGAGCATGCTTTAGATGTTCAATATGCTTCGCGCCTAGGTGTCGATGTCAATAATTTATTAATCTCTCAGCCAG
ATACTGGTGAGCAGGCCTTAGAAATTACAGATGCCTTGGTGCGTTCCGGCTCGATTGATTTAATCGTGATTGACTCAGTG
GCTGCTTTAGTTCCTAGAGCAGAAATCGAAGGCGATATGGGCGATTCATTACCTGGATTACAGGCACGTTTGATGAGTCA
GGCTTTACGTAAGTTGACCGGTGCAATTAAGCGCACTAATACAACCGTGATCTTCATTAACCAGATTCGTATGAAGATTG
GTGTCATGTTTGGATCCCCTGAAACCACCACTGGCGGTAATGCGTTGAAGTTTTATGCCTCTATGCGTTTAGACATTCGC
CGTATTGGCGGTATCAAGAAGGGCGATGAAATCGTCGGCAATGAAACACGTGTCAAGGTAGTCAAGAACAAAGTATCTCC
ACCATTTCGCGAAGCAATTTTTGACATCATGTATGGTGCAGGTATTTCAAGAGAAGGCGAAATTATCGATATGGGCGTAG
AGGCTGATATTGTAGAAAAGTCTGGTTCTTGGTATAGCTACAACGGCGATCGTATTGGTCAAGGTAAAGACAATGTGCGC
GACTTCTTAAAAGAGAATCCAGCAATTTCACAAGATATTGAAGCCAAGATTCGTGCAAAACTAGGTGTGAAGAGCGGCAC
GGCTATCGTGAGTGATGTAGTGAATGACGTCTTAAGCGAAGAAGAGGAAGTGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M9PTW0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.656

95.879

0.764
  recA Neisseria gonorrhoeae MS11

73.636

90.659

0.668
  recA Neisseria gonorrhoeae MS11

73.636

90.659

0.668
  recA Neisseria gonorrhoeae strain FA1090

73.636

90.659

0.668
  recA Acinetobacter baylyi ADP1

71.601

90.934

0.651
  recA Pseudomonas stutzeri DSM 10701

69.096

94.231

0.651
  recA Glaesserella parasuis strain SC1401

67.521

96.429

0.651
  recA Acinetobacter baumannii D1279779

70.871

91.484

0.648
  recA Vibrio cholerae strain A1552

69.419

89.835

0.624
  recA Vibrio cholerae O1 biovar El Tor strain E7946

69.419

89.835

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

66.871

89.56

0.599
  recA Helicobacter pylori strain NCTC11637

66.258

89.56

0.593
  recA Helicobacter pylori 26695

66.258

89.56

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.158

93.956

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

90.934

0.588
  recA Streptococcus mitis SK321

58.192

97.253

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.56

0.56
  recA Lactococcus lactis subsp. cremoris KW2

57.55

96.429

0.555
  recA Streptococcus pneumoniae TIGR4

60.119

92.308

0.555
  recA Streptococcus pneumoniae Rx1

60.119

92.308

0.555
  recA Streptococcus pneumoniae D39

60.119

92.308

0.555
  recA Streptococcus pneumoniae R6

60.119

92.308

0.555
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.118

93.407

0.552
  recA Streptococcus pyogenes NZ131

58.43

94.505

0.552
  recA Streptococcus mitis NCTC 12261

59.821

92.308

0.552
  recA Streptococcus mutans UA159

59.697

90.659

0.541

Multiple sequence alignment