Detailed information NTG0288589

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: DBO93_RS13875
• Genome accession: NZ_CP028924
• Coordinates: 3204193..3205227 (-)
• Length: 344 a.a.
• NCBI ID: WP_108456868.1
• Uniprot ID: A0A7W2U3Q2
• Organism: Colwellia sp. Arc7-D
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3199193..3210227

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBO93_RS13865 (DBO93_13865)	-	3201532..3202272 (+)	741	WP_108456866.1	FadR/GntR family transcriptional regulator	-
DBO93_RS13870 (DBO93_13870)	-	3202620..3203504 (-)	885	WP_108456867.1	NAD(P)-dependent oxidoreductase	-
DBO93_RS13875 (DBO93_13875)	recA	3204193..3205227 (-)	1035	WP_108456868.1	recombinase RecA	Machinery gene
DBO93_RS13880 (DBO93_13880)	uxuA	3205780..3206976 (-)	1197	WP_108456869.1	mannonate dehydratase	-
DBO93_RS13885 (DBO93_13885)	-	3207690..3208766 (-)	1077	WP_108456870.1	class I mannose-6-phosphate isomerase	-
DBO93_RS13890 (DBO93_13890)	-	3208892..3210133 (-)	1242	WP_108456871.1	Nramp family divalent metal transporter	-

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 37106.81 Da
• Isoelectric Point: 6.5234

>NTDB_id=288589 DBO93_RS13875 WP_108456868.1 3204193..3205227(-) (recA) [Colwellia sp. Arc7-D]
MNDNKEKALSAALSQIERQFGKGSIMKLGDNRSMDVETISTGSLGLDIALGAGGLPLGRVVEIYGPESSGKTTLTLEVIA
EAQRNGKICAFVDAEHALDPIYAEKLGVNINELLVSQPDTGEQALEICDMLTRSGAIDIIVVDSVAALTPKAEIEGDMGD
SHMGLQARMLSQAMRKLTGNLKQSNTMIIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAVKNGDEIVGNE
TRVKVVKNKIAPPFKQVEFQILYGEGINSLGELVDLGVKNEMVEKAGAWYSYKGDKIGQGKANAAKYLKENPKVAKEIDT
RLRELLLPKTKPAEAEEKVAAVAK

Nucleotide

• Length: 1035 bp

>NTDB_id=288589 DBO93_RS13875 WP_108456868.1 3204193..3205227(-) (recA) [Colwellia sp. Arc7-D]
ATGAACGATAACAAAGAAAAAGCATTATCAGCTGCCTTAAGCCAAATAGAACGCCAATTTGGTAAAGGTTCAATTATGAA
GTTAGGTGATAATCGCAGCATGGACGTTGAAACAATTTCAACGGGTTCATTAGGATTAGATATCGCACTAGGTGCTGGCG
GTTTGCCGCTTGGACGTGTTGTAGAAATTTACGGTCCAGAATCAAGTGGTAAAACAACATTAACACTTGAAGTTATTGCT
GAGGCACAACGTAATGGTAAAATTTGTGCTTTTGTTGATGCTGAGCATGCACTTGACCCTATCTATGCTGAAAAGCTTGG
TGTTAATATTAATGAGTTATTAGTTTCTCAACCGGATACCGGTGAGCAAGCACTTGAAATATGTGACATGTTAACGCGAT
CTGGTGCGATTGACATTATCGTAGTTGACTCGGTTGCTGCGTTAACACCAAAAGCCGAAATTGAAGGCGATATGGGTGAT
TCACATATGGGTCTACAAGCACGTATGCTTTCACAAGCTATGCGTAAGCTTACTGGTAACTTGAAACAGTCAAATACCAT
GATTATTTTCATTAACCAAATTCGTATGAAAATTGGTGTTATGTTTGGTAGCCCAGAAACCACAACAGGTGGTAATGCAT
TAAAATTCTATGCCTCAGTTCGTTTAGACATACGCCGCATTGGCGCTGTTAAAAATGGTGATGAAATTGTTGGTAACGAA
ACGCGTGTTAAAGTGGTTAAAAACAAAATTGCTCCACCATTTAAACAAGTTGAATTTCAAATTTTATATGGCGAAGGTAT
TAACAGTTTAGGCGAGCTAGTGGACTTAGGCGTTAAAAATGAAATGGTTGAGAAAGCGGGTGCTTGGTATAGTTATAAAG
GTGATAAAATTGGTCAAGGTAAAGCAAACGCAGCTAAATACCTAAAAGAGAACCCTAAAGTAGCAAAAGAAATTGATACA
CGTTTACGTGAGTTGCTGTTGCCGAAAACAAAACCTGCTGAAGCTGAAGAAAAGGTTGCAGCTGTAGCAAAATAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-268)

3D structure

• AlphaFold DB: A0A7W2U3Q2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Vibrio cholerae strain A1552	80.409	99.419	0.799
recA	Vibrio cholerae O1 biovar El Tor strain E7946	80.409	99.419	0.799
recA	Acinetobacter baylyi ADP1	75.076	95.64	0.718
recA	Acinetobacter baumannii D1279779	74.924	95.058	0.712
recA	Pseudomonas stutzeri DSM 10701	74.618	95.058	0.709
recA	Neisseria gonorrhoeae MS11	71.166	94.767	0.674
recA	Neisseria gonorrhoeae MS11	71.166	94.767	0.674
recA	Neisseria gonorrhoeae strain FA1090	71.166	94.767	0.674
recA	Glaesserella parasuis strain SC1401	70.988	94.186	0.669
recA	Ralstonia pseudosolanacearum GMI1000	70.096	90.407	0.634
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.263	92.733	0.596
recA	Helicobacter pylori strain NCTC11637	62.769	94.477	0.593
recA	Helicobacter pylori 26695	62.462	94.477	0.59
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	60.778	97.093	0.59
recA	Streptococcus mitis SK321	62.229	93.895	0.584
recA	Streptococcus pneumoniae D39	61.92	93.895	0.581
recA	Streptococcus mitis NCTC 12261	61.92	93.895	0.581
recA	Streptococcus pneumoniae Rx1	61.92	93.895	0.581
recA	Streptococcus pneumoniae R6	61.92	93.895	0.581
recA	Streptococcus pneumoniae TIGR4	61.92	93.895	0.581
recA	Bacillus subtilis subsp. subtilis str. 168	62.305	93.314	0.581
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.442	92.733	0.57
recA	Streptococcus mutans UA159	59.633	95.058	0.567
recA	Streptococcus pyogenes NZ131	59.633	95.058	0.567
recA	Lactococcus lactis subsp. cremoris KW2	58.514	93.895	0.549
recA	Latilactobacillus sakei subsp. sakei 23K	58.567	93.314	0.547