Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HYN69_RS08340 Genome accession   NZ_CP028918
Coordinates   1731992..1733065 (-) Length   357 a.a.
NCBI ID   WP_108435337.1    Uniprot ID   A0A2S0UL30
Organism   Gemmobacter aquarius strain HYN0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726992..1738065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYN69_RS08325 (HYN69_08325) - 1727829..1728704 (-) 876 WP_108435334.1 LysR family transcriptional regulator -
  HYN69_RS08330 (HYN69_08330) - 1728892..1729182 (-) 291 WP_108435335.1 DUF1330 domain-containing protein -
  HYN69_RS08335 (HYN69_08335) alaS 1729186..1731840 (-) 2655 WP_108435336.1 alanine--tRNA ligase -
  HYN69_RS08340 (HYN69_08340) recA 1731992..1733065 (-) 1074 WP_108435337.1 recombinase RecA Machinery gene
  HYN69_RS21915 (HYN69_08345) - 1733268..1733866 (+) 599 Protein_1639 hypothetical protein -
  HYN69_RS08350 (HYN69_08350) - 1733839..1735566 (-) 1728 WP_108435338.1 ATP-binding protein -
  HYN69_RS08355 (HYN69_08355) - 1735624..1736763 (-) 1140 WP_108435339.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  HYN69_RS08360 (HYN69_08360) - 1736760..1737506 (-) 747 WP_108435340.1 SDR family NAD(P)-dependent oxidoreductase -
  HYN69_RS08365 (HYN69_08365) - 1737595..1737894 (-) 300 WP_108435341.1 hypothetical protein -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38297.93 Da        Isoelectric Point: 4.9657

>NTDB_id=288538 HYN69_RS08340 WP_108435337.1 1731992..1733065(-) (recA) [Gemmobacter aquarius strain HYN0069]
MSTATLLDLNGKREMDKQKALESALAQIERQFGKGSIMKLGENNPIMDIEATSTGSLGLDIALGIGGLPKGRIIEIYGPE
SSGKTTLTLHVVAEEQKKGGVCAFVDAEHALDPQYAKKLGVNLNELLISQPDTGEQALEIVDTLVRSGAVSLIVVDSVAA
LTPKSEIEGDMGDAQVGAQARLMSQAMRKLTASIGRSNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GAIKEKDDVVGNATRVKVVKNKVAPPFKQVEFDIMYGEGISKTGELVDIGVKAGVVEKSGSWYSYGDERIGQGRENAKLF
LKQNPATAQEIEEKIRAANGLDFMMAESEGDADVVDM

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=288538 HYN69_RS08340 WP_108435337.1 1731992..1733065(-) (recA) [Gemmobacter aquarius strain HYN0069]
ATGTCGACAGCGACACTCCTCGACTTGAACGGAAAGCGCGAAATGGACAAGCAGAAGGCGCTGGAAAGCGCACTGGCACA
GATCGAACGGCAGTTCGGCAAGGGCTCGATCATGAAACTTGGGGAAAACAACCCAATCATGGACATCGAGGCAACCTCGA
CCGGATCGCTGGGCCTTGATATCGCGCTGGGAATCGGTGGCCTGCCCAAGGGGCGCATCATCGAAATTTACGGGCCGGAA
TCTTCCGGTAAGACCACGCTCACGCTGCATGTCGTTGCCGAAGAGCAGAAAAAAGGCGGAGTTTGCGCCTTTGTCGATGC
CGAACACGCGCTCGATCCGCAATATGCCAAGAAACTGGGCGTCAATCTGAACGAGTTGCTGATTTCGCAGCCCGACACAG
GCGAGCAGGCACTGGAAATCGTCGACACGCTGGTTCGGTCGGGCGCGGTCAGTCTGATCGTGGTCGACTCGGTCGCCGCG
CTGACGCCGAAGTCCGAGATCGAGGGTGACATGGGCGACGCGCAGGTTGGCGCGCAGGCCCGTCTGATGAGCCAGGCGAT
GCGCAAGCTGACCGCCAGCATCGGGCGCAGCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGCAGCCCCGAAACCACGACGGGCGGCAACGCGCTGAAATTCTACGCCAGCGTCCGTCTGGACATCCGCCGCATC
GGCGCGATCAAGGAAAAGGACGATGTGGTGGGCAATGCGACCCGCGTGAAAGTGGTGAAGAACAAGGTAGCTCCGCCCTT
CAAGCAGGTCGAATTCGACATCATGTATGGCGAGGGGATTTCCAAGACCGGCGAGCTGGTCGATATCGGGGTCAAGGCCG
GTGTCGTCGAAAAATCCGGGTCATGGTATTCCTATGGCGACGAGCGGATCGGACAGGGGCGCGAGAATGCCAAGCTGTTC
CTCAAGCAAAACCCGGCCACCGCGCAAGAGATCGAAGAAAAGATCAGGGCGGCCAACGGTCTGGACTTTATGATGGCCGA
AAGCGAAGGCGATGCGGACGTGGTGGATATGTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(19-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0UL30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

68.406

96.639

0.661
  recA Ralstonia pseudosolanacearum GMI1000

72.1

89.356

0.644
  recA Neisseria gonorrhoeae strain FA1090

68.452

94.118

0.644
  recA Neisseria gonorrhoeae MS11

68.452

94.118

0.644
  recA Neisseria gonorrhoeae MS11

68.452

94.118

0.644
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.717

89.916

0.636
  recA Vibrio cholerae strain A1552

70.717

89.916

0.636
  recA Glaesserella parasuis strain SC1401

70.312

89.636

0.63
  recA Acinetobacter baumannii D1279779

69.47

89.916

0.625
  recA Acinetobacter baylyi ADP1

68.847

89.916

0.619
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.282

94.398

0.616
  recA Bacillus subtilis subsp. subtilis str. 168

67.278

91.597

0.616
  recA Helicobacter pylori strain NCTC11637

66.564

91.317

0.608
  recA Helicobacter pylori 26695

65.951

91.317

0.602
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.337

91.317

0.597
  recA Streptococcus mitis SK321

61.765

95.238

0.588
  recA Streptococcus mitis NCTC 12261

61.765

95.238

0.588
  recA Streptococcus pneumoniae TIGR4

61.176

95.238

0.583
  recA Streptococcus pneumoniae D39

61.176

95.238

0.583
  recA Streptococcus pneumoniae R6

61.176

95.238

0.583
  recA Streptococcus pneumoniae Rx1

61.176

95.238

0.583
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

91.317

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.355

94.678

0.571
  recA Streptococcus mutans UA159

61.212

92.437

0.566
  recA Streptococcus pyogenes NZ131

61.398

92.157

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.802

90.756

0.552

Multiple sequence alignment