Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   SUN_RS00430 Genome accession   NC_009663
Coordinates   79932..80975 (+) Length   347 a.a.
NCBI ID   WP_011979775.1    Uniprot ID   A6Q6D3
Organism   Sulfurovum sp. NBC37-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 74932..85975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SUN_RS00395 (SUN_0075) tpx 75195..75716 (+) 522 WP_011979768.1 thiol peroxidase -
  SUN_RS00400 (SUN_0076) - 75819..76391 (+) 573 WP_232501338.1 L,D-transpeptidase family protein -
  SUN_RS00405 (SUN_0077) - 76411..76797 (+) 387 WP_011979770.1 hypothetical protein -
  SUN_RS00410 (SUN_0078) - 76799..77389 (+) 591 WP_011979771.1 L,D-transpeptidase family protein -
  SUN_RS00415 (SUN_0079) - 77476..77973 (+) 498 WP_011979772.1 DUF1566 domain-containing protein -
  SUN_RS00420 (SUN_0080) - 77975..78751 (-) 777 WP_011979773.1 UDP-N-acetylmuramate dehydrogenase -
  SUN_RS00425 (SUN_0081) - 78788..79654 (-) 867 WP_011979774.1 menaquinone biosynthesis family protein -
  SUN_RS00430 (SUN_0082) recA 79932..80975 (+) 1044 WP_011979775.1 recombinase RecA Machinery gene
  SUN_RS00435 (SUN_0083) eno 81163..82437 (+) 1275 WP_011979776.1 phosphopyruvate hydratase -
  SUN_RS00440 (SUN_0084) - 82446..82697 (+) 252 WP_011979777.1 FtsB family cell division protein -
  SUN_RS12885 (SUN_0085) - 82701..83411 (+) 711 WP_011979778.1 hypothetical protein -
  SUN_RS00450 (SUN_0086) - 83408..84562 (-) 1155 WP_011979779.1 cation:proton antiporter -
  SUN_RS00455 (SUN_0087) - 84549..85406 (-) 858 WP_041672621.1 biotin synthase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37499.12 Da        Isoelectric Point: 4.9357

>NTDB_id=28575 SUN_RS00430 WP_011979775.1 79932..80975(+) (recA) [Sulfurovum sp. NBC37-1]
MAMDAQKQKALDMAIKQIDKTFGKGTLMRLGDKEFEPIAAISTGSLGLDMALGIGGIPQGRIVEVYGPESSGKTTLALQT
IASAQKEGMVCAFIDAEHALDVVYAKNLGVDTDNLLVSQPDFGEQALDVLETLTRSGAVDLIIVDSVAALTPKSEIEGDM
GDTHVGLQARLMSQALRKLTAILHKTNTTVIFINQIRMKIGTMGYGSPETTTGGNALKFYCSVRIDVRRIATLKQGESQI
GNRVKAKVVKNKVAPPFRQAEFDIMFGEGISYIGELIDYGIKMDIVDKSGAWFSYGAEKLGQGKENAKLTLKENPKLREE
IEMQVKEALGFGEALGMDQEEISSADQ

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=28575 SUN_RS00430 WP_011979775.1 79932..80975(+) (recA) [Sulfurovum sp. NBC37-1]
ATGGCAATGGATGCACAAAAGCAAAAAGCACTGGATATGGCGATCAAGCAGATAGACAAGACCTTTGGTAAAGGGACACT
GATGAGACTTGGAGATAAAGAGTTCGAACCGATCGCTGCGATCTCGACGGGGTCACTGGGTCTGGATATGGCATTGGGTA
TCGGAGGTATCCCCCAGGGACGTATCGTTGAAGTGTATGGGCCTGAGTCTTCAGGTAAAACGACTTTGGCTTTGCAGACG
ATCGCATCAGCTCAGAAAGAGGGGATGGTCTGTGCCTTCATTGATGCGGAACATGCACTGGATGTAGTGTATGCAAAGAA
CCTGGGTGTCGATACGGACAACCTTCTGGTCTCACAACCCGATTTTGGAGAGCAGGCACTGGATGTACTTGAAACACTGA
CGCGTTCGGGTGCGGTGGATCTGATCATTGTCGATTCCGTAGCGGCACTGACACCCAAGTCGGAGATAGAGGGTGATATG
GGAGATACACATGTGGGGCTGCAGGCACGTCTGATGTCTCAGGCGCTTCGTAAACTCACGGCGATCCTTCATAAAACGAA
TACCACTGTGATCTTCATTAACCAGATTCGTATGAAGATAGGAACGATGGGATATGGTTCACCGGAAACGACCACAGGGG
GTAACGCATTGAAGTTCTACTGTTCGGTGCGTATTGATGTCAGACGTATTGCGACGCTCAAGCAGGGCGAGTCCCAGATC
GGTAACCGGGTGAAAGCCAAAGTAGTAAAGAACAAGGTAGCACCTCCGTTCAGACAGGCGGAATTCGACATTATGTTTGG
GGAGGGGATCTCCTATATCGGTGAGCTGATCGACTACGGAATCAAAATGGATATCGTCGACAAGTCGGGTGCCTGGTTCA
GCTACGGTGCCGAGAAACTCGGTCAGGGGAAAGAGAATGCCAAACTGACACTCAAAGAGAATCCGAAACTTAGAGAAGAG
ATAGAAATGCAAGTTAAAGAAGCATTAGGGTTCGGGGAAGCATTGGGTATGGATCAGGAAGAGATATCCTCCGCTGACCA
GTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6Q6D3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Helicobacter pylori strain NCTC11637

75.821

96.542

0.732
  recA Helicobacter pylori 26695

75.522

96.542

0.729
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

75.988

94.813

0.72
  recA Glaesserella parasuis strain SC1401

65.741

93.372

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.438

94.813

0.611
  recA Vibrio cholerae strain A1552

61.628

99.135

0.611
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.628

99.135

0.611
  recA Acinetobacter baumannii D1279779

61.988

98.559

0.611
  recA Acinetobacter baylyi ADP1

64.526

94.236

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

64.22

94.236

0.605
  recA Pseudomonas stutzeri DSM 10701

64.22

94.236

0.605
  recA Neisseria gonorrhoeae strain FA1090

64.615

93.66

0.605
  recA Neisseria gonorrhoeae MS11

64.615

93.66

0.605
  recA Neisseria gonorrhoeae MS11

64.615

93.66

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.121

95.101

0.591
  recA Streptococcus pneumoniae R6

57.514

99.712

0.573
  recA Streptococcus pneumoniae Rx1

57.514

99.712

0.573
  recA Streptococcus pneumoniae D39

57.514

99.712

0.573
  recA Streptococcus pneumoniae TIGR4

57.514

99.712

0.573
  recA Streptococcus mitis SK321

56.447

100

0.568
  recA Lactococcus lactis subsp. cremoris KW2

57.434

98.847

0.568
  recA Streptococcus mitis NCTC 12261

57.101

99.424

0.568
  recA Streptococcus pyogenes NZ131

59.271

94.813

0.562
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

94.524

0.559
  recA Streptococcus mutans UA159

56.433

98.559

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

57.958

95.965

0.556

Multiple sequence alignment