Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | DSM105001_RS06995 | Genome accession | NZ_CP028361 |
| Coordinates | 1451075..1452121 (+) | Length | 348 a.a. |
| NCBI ID | WP_021364420.1 | Uniprot ID | A0A9X8RFQ1 |
| Organism | Clostridioides difficile strain DSM 105001 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1425027..1489861 | 1451075..1452121 | within | 0 |
Gene organization within MGE regions
Location: 1425027..1489861
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DSM105001_RS06880 (DSM105001_01389) | rimP | 1427443..1427904 (+) | 462 | WP_003438303.1 | ribosome maturation factor RimP | - |
| DSM105001_RS06885 (DSM105001_01390) | nusA | 1427934..1429088 (+) | 1155 | WP_003428238.1 | transcription termination factor NusA | - |
| DSM105001_RS06890 (DSM105001_01391) | rnpM | 1429095..1429376 (+) | 282 | WP_003419469.1 | RNase P modulator RnpM | - |
| DSM105001_RS06895 (DSM105001_01392) | - | 1429366..1429677 (+) | 312 | WP_003419470.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| DSM105001_RS06900 (DSM105001_01393) | infB | 1429699..1431639 (+) | 1941 | WP_003438306.1 | translation initiation factor IF-2 | - |
| DSM105001_RS06905 (DSM105001_01394) | rbfA | 1431682..1432062 (+) | 381 | WP_003428234.1 | 30S ribosome-binding factor RbfA | - |
| DSM105001_RS06910 (DSM105001_01395) | - | 1432043..1432720 (+) | 678 | Protein_1269 | DHH family phosphoesterase | - |
| DSM105001_RS06915 (DSM105001_01396) | tnpB | 1433360..1434478 (+) | 1119 | WP_032548186.1 | IS200/IS605 family element RNA-guided endonuclease TnpB | - |
| DSM105001_RS06920 (DSM105001_01397) | - | 1434596..1434901 (+) | 306 | Protein_1271 | DHH family phosphoesterase | - |
| DSM105001_RS06925 (DSM105001_01398) | truB | 1434914..1435819 (+) | 906 | WP_003428232.1 | tRNA pseudouridine(55) synthase TruB | - |
| DSM105001_RS06930 (DSM105001_01399) | - | 1435950..1436879 (+) | 930 | WP_003438310.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| DSM105001_RS06935 (DSM105001_01400) | rpsO | 1436983..1437240 (+) | 258 | WP_003419491.1 | 30S ribosomal protein S15 | - |
| DSM105001_RS06940 (DSM105001_01401) | - | 1437480..1438325 (+) | 846 | WP_009889099.1 | DegV family protein | - |
| DSM105001_RS06945 (DSM105001_01402) | pnp | 1438450..1440561 (+) | 2112 | WP_003438316.1 | polyribonucleotide nucleotidyltransferase | - |
| DSM105001_RS06950 (DSM105001_01403) | - | 1440827..1441570 (+) | 744 | WP_003438319.1 | polysaccharide deacetylase family protein | - |
| DSM105001_RS06955 (DSM105001_01404) | - | 1441728..1442975 (+) | 1248 | WP_009902409.1 | M16 family metallopeptidase | - |
| DSM105001_RS06960 (DSM105001_01405) | - | 1443010..1443255 (+) | 246 | WP_021364423.1 | YlmC/YmxH family sporulation protein | - |
| DSM105001_RS06965 (DSM105001_01406) | dapG | 1443265..1444488 (+) | 1224 | WP_003438324.1 | aspartate kinase | - |
| DSM105001_RS06970 (DSM105001_01407) | - | 1444601..1445335 (+) | 735 | WP_021364422.1 | ClpP family protease | - |
| DSM105001_RS06975 (DSM105001_01408) | - | 1445458..1447869 (+) | 2412 | WP_003438328.1 | FtsK/SpoIIIE family DNA translocase | - |
| DSM105001_RS06980 (DSM105001_01409) | mnmH | 1447872..1448930 (+) | 1059 | WP_003433322.1 | tRNA 2-selenouridine(34) synthase MnmH | - |
| DSM105001_RS06985 (DSM105001_01410) | rimO | 1448924..1450258 (+) | 1335 | WP_003433320.1 | 30S ribosomal protein S12 methylthiotransferase RimO | - |
| DSM105001_RS06990 (DSM105001_01411) | pgsA | 1450245..1450787 (+) | 543 | WP_009889106.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| DSM105001_RS06995 (DSM105001_01412) | recA | 1451075..1452121 (+) | 1047 | WP_021364420.1 | recombinase RecA | Machinery gene |
| DSM105001_RS07000 (DSM105001_01413) | rny | 1452297..1453838 (+) | 1542 | WP_003428216.1 | ribonuclease Y | - |
| DSM105001_RS07005 (DSM105001_01414) | - | 1454473..1456254 (+) | 1782 | WP_003438344.1 | UvrD-helicase domain-containing protein | - |
| DSM105001_RS07010 (DSM105001_01415) | lepB | 1456336..1456866 (-) | 531 | WP_009902411.1 | signal peptidase I | - |
| DSM105001_RS07015 (DSM105001_01416) | - | 1456906..1457730 (-) | 825 | WP_003438350.1 | undecaprenyl-diphosphate phosphatase | - |
| DSM105001_RS07020 (DSM105001_01417) | - | 1457987..1458895 (+) | 909 | WP_009889110.1 | tyrosine-type recombinase/integrase | - |
| DSM105001_RS07025 (DSM105001_01418) | purB | 1459039..1460484 (+) | 1446 | WP_003438353.1 | adenylosuccinate lyase | - |
| DSM105001_RS07030 (DSM105001_01419) | - | 1460795..1461247 (+) | 453 | WP_003419561.1 | MarR family winged helix-turn-helix transcriptional regulator | - |
| DSM105001_RS07035 (DSM105001_01420) | - | 1461659..1463236 (+) | 1578 | WP_021364419.1 | PTS transporter subunit EIIC | - |
| DSM105001_RS07040 (DSM105001_01421) | - | 1463384..1464136 (+) | 753 | WP_009892977.1 | MurR/RpiR family transcriptional regulator | - |
| DSM105001_RS07045 (DSM105001_01422) | - | 1464269..1465615 (+) | 1347 | WP_009902417.1 | 6-phospho-alpha-glucosidase | - |
| DSM105001_RS07050 (DSM105001_01423) | - | 1465727..1466923 (-) | 1197 | WP_003438357.1 | pyridoxal phosphate-dependent aminotransferase | - |
| DSM105001_RS07055 (DSM105001_01424) | galT | 1467308..1468258 (+) | 951 | WP_009889113.1 | galactose-1-phosphate uridylyltransferase | - |
| DSM105001_RS07060 (DSM105001_01425) | - | 1468419..1469171 (+) | 753 | WP_003438367.1 | exodeoxyribonuclease III | - |
| DSM105001_RS07065 (DSM105001_01426) | - | 1469263..1470039 (-) | 777 | WP_009896237.1 | 3'-5' exonuclease | - |
| DSM105001_RS07070 (DSM105001_01427) | - | 1470354..1472252 (+) | 1899 | WP_003428202.1 | glutamine synthetase | - |
| DSM105001_RS07075 (DSM105001_01428) | - | 1472380..1473501 (-) | 1122 | WP_003438374.1 | MGDG synthase family glycosyltransferase | - |
| DSM105001_RS07080 (DSM105001_01429) | - | 1473700..1474032 (+) | 333 | WP_009889116.1 | PadR family transcriptional regulator | - |
| DSM105001_RS07085 (DSM105001_01430) | - | 1474019..1475077 (+) | 1059 | WP_021367719.1 | DUF1700 domain-containing protein | - |
| DSM105001_RS07090 (DSM105001_01431) | - | 1475070..1476140 (+) | 1071 | WP_021364425.1 | DUF4097 family beta strand repeat-containing protein | - |
| DSM105001_RS07095 (DSM105001_01432) | - | 1476242..1476778 (+) | 537 | WP_003428196.1 | lipoprotein | - |
| DSM105001_RS07100 (DSM105001_01433) | - | 1476894..1477601 (+) | 708 | WP_009902422.1 | lantibiotic protection ABC transporter ATP-binding protein | - |
| DSM105001_RS07105 (DSM105001_01434) | - | 1477603..1478319 (+) | 717 | WP_009896246.1 | lantibiotic immunity ABC transporter MutE/EpiE family permease subunit | - |
| DSM105001_RS07110 (DSM105001_01435) | - | 1478321..1479079 (+) | 759 | WP_009902423.1 | lantibiotic immunity ABC transporter MutG family permease subunit | - |
| DSM105001_RS07115 (DSM105001_01436) | - | 1479214..1480602 (+) | 1389 | WP_021364432.1 | two-component system sensor histidine kinase | - |
| DSM105001_RS07120 (DSM105001_01437) | - | 1480678..1481499 (-) | 822 | WP_021364435.1 | pyridoxamine kinase | - |
| DSM105001_RS07125 (DSM105001_01438) | - | 1481750..1482904 (+) | 1155 | WP_009902426.1 | amidase domain-containing protein | - |
| DSM105001_RS07130 (DSM105001_01439) | - | 1483087..1483287 (+) | 201 | WP_003419624.1 | cold-shock protein | - |
| DSM105001_RS07135 (DSM105001_01440) | - | 1483708..1484136 (+) | 429 | WP_009889129.1 | CBS domain-containing protein | - |
| DSM105001_RS07140 (DSM105001_01441) | - | 1484279..1485034 (-) | 756 | WP_009889131.1 | peptidylprolyl isomerase | - |
| DSM105001_RS07145 (DSM105001_01443) | - | 1485735..1486241 (-) | 507 | WP_003428186.1 | ImmA/IrrE family metallo-endopeptidase | - |
| DSM105001_RS07150 (DSM105001_01444) | - | 1486323..1486643 (-) | 321 | WP_003428185.1 | XRE family transcriptional regulator | - |
| DSM105001_RS07155 (DSM105001_01445) | - | 1486812..1487009 (+) | 198 | WP_003419641.1 | helix-turn-helix transcriptional regulator | - |
| DSM105001_RS07160 (DSM105001_01446) | - | 1487114..1487554 (+) | 441 | WP_003428183.1 | hypothetical protein | - |
| DSM105001_RS07165 (DSM105001_01447) | - | 1487803..1488246 (+) | 444 | WP_003438413.1 | phage tail terminator family protein | - |
| DSM105001_RS07170 (DSM105001_01448) | - | 1488251..1489315 (+) | 1065 | WP_003438414.1 | phage tail sheath subtilisin-like domain-containing protein | - |
| DSM105001_RS07175 (DSM105001_01449) | - | 1489329..1489757 (+) | 429 | WP_003419646.1 | phage tail tube protein | - |
Sequence
Protein
Download Length: 348 a.a. Molecular weight: 37389.74 Da Isoelectric Point: 4.8236
>NTDB_id=284360 DSM105001_RS06995 WP_021364420.1 1451075..1452121(+) (recA) [Clostridioides difficile strain DSM 105001]
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
MSVDQEKLKALNEALGKIEKDFGKGSVMKLGEATSMSIDVISTGAIGLDIAIGIGGLPRGRIVEVYGPESSGKTTVALSC
VASAQKDGGIAAFIDAEHALDPVYAKALGVDVDNLIISQPDTGEQALEIAEALIRSGAIDIIVIDSVAALVPKAEIDGDM
GDSHVGLQARLMSQALRKLTGSIKKSNCVAIFINQLREKVGIMFGNPETTTGGRALKFYSSVRLDVRKIDTIKQGDKVIG
SRTRVKVVKNKVAPPFKQAEFDIMYGEGISKIGDLLDIAADVDIVKKSGSWYSYNDTKLGQGRENVKKFLEDNLDLTTEI
DEKVRAFYNLNEEHEESGISVSKEIVEE
Nucleotide
Download Length: 1047 bp
>NTDB_id=284360 DSM105001_RS06995 WP_021364420.1 1451075..1452121(+) (recA) [Clostridioides difficile strain DSM 105001]
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
ATGAGTGTAGATCAAGAAAAATTAAAAGCGTTGAATGAAGCTTTAGGTAAAATTGAAAAAGATTTTGGTAAAGGTTCAGT
AATGAAATTGGGAGAAGCAACATCTATGTCTATAGATGTTATATCAACAGGAGCGATTGGTTTAGACATAGCTATTGGTA
TAGGAGGTCTACCTAGAGGGAGAATAGTTGAAGTATATGGTCCAGAATCTTCTGGTAAAACTACTGTTGCGCTTAGTTGT
GTAGCATCAGCTCAAAAAGATGGAGGAATAGCTGCATTTATAGATGCAGAACATGCACTTGACCCAGTATATGCAAAAGC
TTTGGGTGTGGATGTTGATAACCTAATAATATCTCAACCAGATACAGGTGAACAGGCTTTAGAGATAGCAGAGGCATTGA
TAAGAAGTGGAGCGATAGATATAATAGTAATAGACTCAGTAGCAGCATTAGTTCCAAAGGCTGAAATAGATGGAGATATG
GGTGATTCTCATGTAGGTTTACAAGCTAGACTTATGTCACAAGCACTTAGAAAGTTAACTGGTTCAATTAAAAAATCAAA
TTGTGTTGCTATATTTATAAACCAGTTAAGAGAGAAAGTAGGAATAATGTTTGGAAACCCGGAAACTACTACTGGAGGAC
GTGCACTAAAATTCTATTCATCAGTTAGATTGGATGTTAGAAAAATAGATACAATAAAACAAGGTGATAAAGTTATAGGT
AGTAGAACTAGAGTTAAAGTTGTTAAAAACAAAGTAGCACCACCATTTAAGCAAGCTGAATTTGATATAATGTATGGAGA
AGGAATTTCAAAAATTGGAGACCTTTTAGATATAGCTGCTGATGTAGATATAGTTAAAAAATCAGGTTCATGGTATAGTT
ACAATGATACTAAACTTGGACAAGGAAGAGAAAATGTTAAAAAATTCTTGGAAGATAATTTAGATTTAACTACTGAAATA
GATGAGAAAGTTAGAGCATTTTACAATTTAAATGAAGAACATGAAGAATCAGGTATTTCAGTATCAAAAGAAATTGTAGA
AGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.