Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AMET_RS13110 Genome accession   NC_009633
Coordinates   2673451..2674494 (-) Length   347 a.a.
NCBI ID   WP_012063783.1    Uniprot ID   A6TRJ2
Organism   Alkaliphilus metalliredigens QYMF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2668451..2679494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMET_RS13085 (Amet_2653) - 2668455..2669648 (-) 1194 WP_012063778.1 pyridoxal phosphate-dependent aminotransferase -
  AMET_RS13090 (Amet_2654) - 2669790..2670167 (-) 378 WP_012063779.1 PadR family transcriptional regulator -
  AMET_RS13095 (Amet_2655) - 2670174..2671004 (-) 831 WP_012063780.1 PHP domain-containing protein -
  AMET_RS13100 (Amet_2656) - 2671225..2671485 (-) 261 WP_012063781.1 stage V sporulation protein S -
  AMET_RS13105 (Amet_2657) rny 2671718..2673256 (-) 1539 WP_041720793.1 ribonuclease Y -
  AMET_RS13110 (Amet_2658) recA 2673451..2674494 (-) 1044 WP_012063783.1 recombinase RecA Machinery gene
  AMET_RS13115 (Amet_2659) pgsA 2674695..2675231 (-) 537 WP_012063784.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AMET_RS13120 (Amet_2660) rimO 2675215..2676555 (-) 1341 WP_012063785.1 30S ribosomal protein S12 methylthiotransferase RimO -
  AMET_RS13125 (Amet_2661) mnmH 2676558..2677646 (-) 1089 WP_012063786.1 tRNA 2-selenouridine(34) synthase MnmH -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37698.18 Da        Isoelectric Point: 6.7704

>NTDB_id=28393 AMET_RS13110 WP_012063783.1 2673451..2674494(-) (recA) [Alkaliphilus metalliredigens QYMF]
MEKKKALDVAISQIEKQFGKGSIMKLGEDSKLSLECISTGSIDLDVAIGIGGVPRGRVVEIYGPESSGKTTVSLHIIAEA
QKNGGSAAFIDAEHALDPIYARKLGVDTENLIVSQPDTGEQALEIAEALVRSGAIDVIVVDSVAALVPKAEIEGEMGDSH
MGLQARLMSQALRKLSGSINKSNTTAIFINQLREKIGVMFGNPETTTGGRALKFYASVRLDVRRIDVIKQGNDIIGNRTR
VKVVKNKIAPPFKQAEFDIMYGEGISKTGDVLDVASNLEIIKKAGAWYSYGDHRLGQGRENSKQFLKENPDIFLEVENKI
REHHNLPLVSRPVVVQSPQKEVAEKEV

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=28393 AMET_RS13110 WP_012063783.1 2673451..2674494(-) (recA) [Alkaliphilus metalliredigens QYMF]
ATGGAGAAAAAAAAAGCGCTTGATGTAGCTATTAGCCAAATCGAAAAGCAATTTGGAAAAGGCTCAATTATGAAATTAGG
AGAAGACTCTAAATTAAGCTTAGAATGTATTTCTACTGGCTCTATTGATCTAGATGTTGCCATTGGAATAGGAGGGGTCC
CACGGGGAAGAGTTGTGGAAATCTATGGTCCTGAGTCCTCAGGTAAAACAACTGTTTCACTTCATATTATCGCAGAGGCA
CAAAAAAATGGGGGATCAGCTGCTTTTATTGATGCTGAGCATGCCCTTGACCCCATATATGCTAGAAAACTAGGAGTAGA
TACAGAAAACTTAATTGTTTCTCAGCCCGATACTGGTGAACAAGCTCTAGAAATAGCTGAAGCATTAGTACGAAGTGGTG
CTATTGATGTTATCGTTGTTGATTCCGTTGCTGCTCTCGTACCTAAGGCAGAGATTGAAGGTGAGATGGGCGATTCTCAT
ATGGGATTACAAGCAAGATTAATGTCCCAAGCTTTAAGAAAGCTATCTGGATCCATCAACAAATCAAATACAACCGCAAT
ATTCATTAACCAACTAAGAGAGAAAATTGGTGTCATGTTTGGAAATCCAGAAACCACAACGGGGGGACGTGCATTAAAGT
TCTACGCTTCAGTTCGACTAGATGTTAGAAGGATCGACGTTATTAAACAGGGAAATGATATCATTGGAAATAGAACCAGA
GTTAAAGTTGTTAAAAATAAAATTGCACCTCCTTTTAAACAAGCAGAATTTGATATTATGTATGGTGAAGGTATTTCCAA
GACAGGTGATGTCTTAGATGTGGCAAGTAACTTAGAAATAATCAAAAAAGCTGGTGCATGGTATAGCTATGGAGATCACA
GACTAGGCCAAGGTCGTGAAAATTCCAAACAGTTCTTAAAGGAAAACCCCGATATATTTTTAGAGGTTGAAAATAAAATT
AGAGAACATCATAATCTTCCACTGGTGAGTAGACCTGTGGTTGTCCAATCCCCACAAAAAGAGGTAGCTGAAAAAGAAGT
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(5-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6TRJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

72

93.66

0.674
  recA Glaesserella parasuis strain SC1401

65.861

95.389

0.628
  recA Streptococcus mitis SK321

62.536

100

0.625
  recA Streptococcus mitis NCTC 12261

62.536

100

0.625
  recA Acinetobacter baylyi ADP1

67.29

92.507

0.622
  recA Helicobacter pylori 26695

63.905

97.406

0.622
  recA Helicobacter pylori strain NCTC11637

63.905

97.406

0.622
  recA Neisseria gonorrhoeae MS11

66.978

92.507

0.62
  recA Neisseria gonorrhoeae strain FA1090

66.978

92.507

0.62
  recA Neisseria gonorrhoeae MS11

66.978

92.507

0.62
  recA Streptococcus pneumoniae Rx1

65.046

94.813

0.617
  recA Streptococcus pneumoniae TIGR4

65.046

94.813

0.617
  recA Streptococcus pneumoniae R6

65.046

94.813

0.617
  recA Streptococcus pneumoniae D39

65.046

94.813

0.617
  recA Latilactobacillus sakei subsp. sakei 23K

65.846

93.66

0.617
  recA Acinetobacter baumannii D1279779

66.355

92.507

0.614
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.832

94.236

0.611
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.938

92.219

0.608
  recA Streptococcus mutans UA159

64.134

94.813

0.608
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.253

95.677

0.605
  recA Vibrio cholerae strain A1552

63.253

95.677

0.605
  recA Streptococcus pyogenes NZ131

64.198

93.372

0.599
  recA Ralstonia pseudosolanacearum GMI1000

67.097

89.337

0.599
  recA Lactococcus lactis subsp. cremoris KW2

62.918

94.813

0.597
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

64.375

92.219

0.594
  recA Pseudomonas stutzeri DSM 10701

63.636

91.931

0.585

Multiple sequence alignment