Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ROSERS_RS16040 Genome accession   NC_009523
Coordinates   3917502..3918563 (-) Length   353 a.a.
NCBI ID   WP_011957825.1    Uniprot ID   -
Organism   Roseiflexus sp. RS-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3912502..3923563
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ROSERS_RS16025 (RoseRS_3115) - 3914222..3915895 (-) 1674 WP_011957822.1 CTP synthase -
  ROSERS_RS16030 (RoseRS_3116) - 3916134..3916796 (-) 663 WP_011957823.1 MBL fold metallo-hydrolase -
  ROSERS_RS16035 (RoseRS_3117) - 3916806..3917495 (-) 690 WP_011957824.1 regulatory protein RecX -
  ROSERS_RS16040 (RoseRS_3118) recA 3917502..3918563 (-) 1062 WP_011957825.1 recombinase RecA Machinery gene
  ROSERS_RS16045 (RoseRS_3119) - 3918777..3919679 (-) 903 WP_232282636.1 sortase -
  ROSERS_RS16050 (RoseRS_3120) - 3919976..3921076 (-) 1101 WP_011957827.1 glycosyltransferase family 4 protein -
  ROSERS_RS16055 (RoseRS_3121) - 3921081..3922232 (-) 1152 WP_011957828.1 glycosyltransferase family 1 protein -
  ROSERS_RS16060 (RoseRS_3122) fabZ 3922366..3922797 (+) 432 WP_011957829.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ROSERS_RS16070 (RoseRS_3124) - 3923124..3923498 (+) 375 WP_041333891.1 nucleotidyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37968.60 Da        Isoelectric Point: 5.3253

>NTDB_id=28313 ROSERS_RS16040 WP_011957825.1 3917502..3918563(-) (recA) [Roseiflexus sp. RS-1]
MALSPEKEKALAAAMSQIDRKYGKGSIMRMGEVSSKLAIEVIPTGSIALDIALGVGGVPRGRVVEIYGPESSGKTTLAQH
IIAEAQKMGGIAAFIDAEHAFDPVYAARCGVDVNNLLVSQPDYGEQALEICEALVRSNAVDVVVVDSVAALVPRAEIEGD
MGDSLPGLQARLMSQALRKLSGAISKSRAVVIFLNQLRLKIGVMFGSPETTTGGQALKFYASVRMDIRRIETLKNGQETI
GSRTRVKVVKNKVAPPFRQAEFDIMHNEGISRAGNILDVGVELDIIRKSGAWFYLGDDRLGQGRENAKQFLNENPALADE
IERLIRAHAMAAPISIVSPKEDDAVEDAGLFEE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=28313 ROSERS_RS16040 WP_011957825.1 3917502..3918563(-) (recA) [Roseiflexus sp. RS-1]
ATGGCCCTCTCCCCGGAAAAGGAAAAGGCTCTGGCAGCAGCCATGAGCCAGATCGACCGCAAATACGGCAAGGGCTCGAT
CATGCGGATGGGGGAAGTCAGTTCCAAACTGGCGATCGAAGTCATCCCCACCGGGTCGATTGCGCTCGACATTGCGCTGG
GCGTCGGCGGCGTGCCACGGGGTCGGGTTGTCGAAATCTACGGTCCGGAGTCCAGCGGTAAAACGACCCTGGCGCAGCAT
ATCATCGCTGAGGCGCAGAAGATGGGCGGCATCGCCGCCTTCATCGACGCCGAGCATGCGTTCGATCCGGTCTATGCAGC
ACGATGCGGCGTTGATGTCAACAATCTGCTGGTCTCGCAACCCGATTACGGTGAGCAGGCGCTTGAGATCTGCGAAGCGC
TGGTGCGCTCGAATGCGGTCGATGTCGTAGTGGTCGACTCGGTTGCTGCGCTGGTGCCGCGCGCTGAGATCGAAGGCGAC
ATGGGCGACTCGCTCCCCGGTCTGCAGGCGCGGTTAATGAGCCAGGCGCTGCGCAAACTTTCCGGCGCCATCAGCAAATC
ACGCGCGGTTGTCATTTTTCTCAACCAGCTCCGCCTGAAGATCGGCGTGATGTTCGGCTCGCCGGAGACTACCACCGGCG
GTCAGGCGCTGAAGTTCTACGCATCGGTGCGGATGGACATCCGCCGCATTGAGACGCTCAAGAACGGTCAGGAGACGATC
GGCAGTCGCACGCGGGTGAAGGTGGTCAAGAACAAGGTCGCGCCGCCCTTCCGCCAGGCGGAGTTCGATATTATGCACAA
CGAGGGCATCTCGCGCGCTGGCAATATCCTTGATGTCGGCGTCGAACTCGACATCATTCGCAAGAGCGGCGCCTGGTTCT
ATCTCGGCGACGATCGCCTGGGTCAGGGGCGCGAAAATGCCAAGCAGTTCCTGAACGAAAACCCGGCGCTGGCAGATGAA
ATTGAGCGCCTGATCCGCGCTCACGCAATGGCGGCGCCGATCTCGATTGTATCGCCCAAAGAAGACGATGCCGTAGAAGA
CGCAGGACTGTTCGAGGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

63.343

96.601

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.653

93.768

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.561

98.017

0.603
  recA Bacillus subtilis subsp. subtilis str. 168

65.635

91.501

0.601
  recA Neisseria gonorrhoeae MS11

64.615

92.068

0.595
  recA Neisseria gonorrhoeae MS11

64.615

92.068

0.595
  recA Neisseria gonorrhoeae strain FA1090

64.615

92.068

0.595
  recA Helicobacter pylori strain NCTC11637

63.914

92.635

0.592
  recA Helicobacter pylori 26695

63.914

92.635

0.592
  recA Pseudomonas stutzeri DSM 10701

63.415

92.918

0.589
  recA Glaesserella parasuis strain SC1401

59.654

98.3

0.586
  recA Latilactobacillus sakei subsp. sakei 23K

61.424

95.467

0.586
  recA Acinetobacter baylyi ADP1

57.714

99.15

0.572
  recA Streptococcus mitis NCTC 12261

56.941

100

0.569
  recA Streptococcus pneumoniae Rx1

60.123

92.351

0.555
  recA Streptococcus pneumoniae D39

60.123

92.351

0.555
  recA Streptococcus pneumoniae R6

60.123

92.351

0.555
  recA Streptococcus pneumoniae TIGR4

60.123

92.351

0.555
  recA Acinetobacter baumannii D1279779

59.091

93.484

0.552
  recA Lactococcus lactis subsp. cremoris KW2

59.509

92.351

0.55
  recA Streptococcus mitis SK321

59.327

92.635

0.55
  recA Streptococcus pyogenes NZ131

59.692

92.068

0.55
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.146

92.918

0.55
  recA Vibrio cholerae O1 biovar El Tor strain E7946

59.568

91.785

0.547
  recA Vibrio cholerae strain A1552

59.568

91.785

0.547
  recA Streptococcus mutans UA159

58.104

92.635

0.538

Multiple sequence alignment