Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C7S20_RS06175 Genome accession   NZ_CP028136
Coordinates   1339316..1340329 (-) Length   337 a.a.
NCBI ID   WP_107011664.1    Uniprot ID   A0A2R3Z3P1
Organism   Christiangramia fulva strain SH35     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1334316..1345329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7S20_RS06150 (C7S20_06150) trpS 1334974..1335942 (-) 969 WP_107011659.1 tryptophan--tRNA ligase -
  C7S20_RS06155 (C7S20_06155) - 1336016..1336759 (+) 744 WP_107011660.1 lysophospholipid acyltransferase family protein -
  C7S20_RS06160 (C7S20_06160) - 1336756..1338201 (-) 1446 WP_107011661.1 hypothetical protein -
  C7S20_RS06165 (C7S20_06165) - 1338198..1338743 (-) 546 WP_107011662.1 RNA polymerase sigma factor -
  C7S20_RS06170 (C7S20_06170) - 1338771..1339223 (-) 453 WP_159039882.1 membrane lipoprotein lipid attachment site-containing protein -
  C7S20_RS06175 (C7S20_06175) recA 1339316..1340329 (-) 1014 WP_107011664.1 recombinase RecA Machinery gene
  C7S20_RS06180 (C7S20_06180) - 1340526..1341767 (+) 1242 WP_107014116.1 peptidase U32 family protein -
  C7S20_RS06185 (C7S20_06185) - 1341767..1341997 (+) 231 WP_107011665.1 ferredoxin -
  C7S20_RS06190 (C7S20_06190) - 1342030..1343061 (+) 1032 WP_107011666.1 rhodanese-related sulfurtransferase -
  C7S20_RS06195 (C7S20_06195) ricT 1343315..1344490 (+) 1176 WP_107011667.1 regulatory iron-sulfur-containing complex subunit RicT -
  C7S20_RS06200 (C7S20_06200) - 1344483..1344971 (+) 489 WP_107011668.1 gliding motility lipoprotein GldH -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36907.35 Da        Isoelectric Point: 6.1744

>NTDB_id=281500 C7S20_RS06175 WP_107011664.1 1339316..1340329(-) (recA) [Christiangramia fulva strain SH35]
MSNDKEKEAKLKALKLTLDKMDKTYGKGTVMKMSDQNIVDVDAISTGSLGLDLALGVGGYPRGRVIEIYGPESSGKTTLT
LHAIAEAQRKGGIAAFIDAEHAFDRFYAEKLHVDIDNLIISQPDNGEQALEITDNLIRSGAIDIIVIDSVAALTPKSEIE
GEMGDSKMGLHARLMSQALRKLTASISKTNCTVIFINQLREKIGVMFGNPETTTGGNALKFYASVRLDIRRSTQIKDSSN
NVMGNKTRVKVVKNKVAPPFKTAEFDIMYGEGVSKIGEIIDIGVEYEIIKKSGSWFSYEDTKLGQGRDAVKALLKDNPDL
MDELETKIKEAIKITQE

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=281500 C7S20_RS06175 WP_107011664.1 1339316..1340329(-) (recA) [Christiangramia fulva strain SH35]
ATGAGCAACGATAAAGAGAAAGAGGCAAAACTAAAGGCGCTGAAGCTTACTTTAGACAAGATGGACAAAACCTACGGCAA
GGGTACGGTCATGAAAATGAGTGATCAGAATATTGTAGATGTAGATGCGATTTCTACAGGATCTCTGGGTCTTGACCTTG
CGCTGGGGGTAGGCGGCTACCCGCGTGGAAGGGTGATCGAAATCTACGGTCCAGAATCTTCAGGTAAAACCACTCTTACT
CTTCATGCAATTGCTGAAGCACAAAGAAAAGGCGGTATCGCAGCCTTTATTGACGCTGAACATGCTTTTGACAGGTTCTA
TGCCGAAAAACTGCATGTAGACATTGATAACCTCATCATCTCTCAACCAGATAACGGAGAACAGGCTCTTGAAATTACCG
ATAATCTGATCCGTTCCGGGGCGATCGATATAATCGTGATCGACTCGGTTGCAGCTCTTACTCCCAAAAGCGAGATCGAA
GGGGAAATGGGAGATTCCAAAATGGGTCTTCATGCGCGTTTGATGTCACAGGCTTTGAGAAAGTTAACCGCTTCAATAAG
TAAGACAAATTGTACGGTAATTTTCATCAACCAGCTCCGCGAGAAAATCGGTGTGATGTTTGGAAATCCGGAAACCACTA
CCGGTGGTAACGCACTTAAATTTTATGCTTCTGTTCGCCTTGATATCAGAAGATCCACCCAGATCAAAGACAGCAGCAAT
AACGTTATGGGTAACAAGACCCGCGTGAAAGTTGTGAAGAACAAAGTAGCTCCACCATTCAAAACTGCCGAATTTGACAT
TATGTATGGTGAGGGAGTTTCCAAGATCGGTGAGATCATCGATATAGGCGTGGAATACGAGATCATAAAAAAGAGCGGCT
CGTGGTTTAGCTATGAAGACACTAAACTCGGCCAGGGCCGGGATGCGGTAAAAGCATTGCTGAAAGATAATCCTGATCTA
ATGGATGAACTTGAAACCAAAATCAAGGAGGCTATTAAGATCACTCAGGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(12-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3Z3P1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

75.076

97.626

0.733
  recA Neisseria gonorrhoeae MS11

63.636

97.923

0.623
  recA Neisseria gonorrhoeae strain FA1090

63.636

97.923

0.623
  recA Neisseria gonorrhoeae MS11

63.636

97.923

0.623
  recA Ralstonia pseudosolanacearum GMI1000

66.032

93.472

0.617
  recA Helicobacter pylori strain NCTC11637

62.84

98.22

0.617
  recA Helicobacter pylori 26695

62.538

98.22

0.614
  recA Glaesserella parasuis strain SC1401

62.997

97.033

0.611
  recA Acinetobacter baumannii D1279779

62.5

97.329

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.883

96.736

0.608
  recA Bacillus subtilis subsp. subtilis str. 168

64.151

94.362

0.605
  recA Acinetobacter baylyi ADP1

62.848

95.846

0.602
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.846

96.439

0.596
  recA Vibrio cholerae strain A1552

61.846

96.439

0.596
  recA Pseudomonas stutzeri DSM 10701

60.976

97.329

0.593
  recA Streptococcus mitis NCTC 12261

60.748

95.252

0.579
  recA Latilactobacillus sakei subsp. sakei 23K

58.967

97.626

0.576
  recA Streptococcus pyogenes NZ131

60.062

95.846

0.576
  recA Streptococcus mitis SK321

60.436

95.252

0.576
  recA Lactococcus lactis subsp. cremoris KW2

59.752

95.846

0.573
  recA Streptococcus pneumoniae R6

59.813

95.252

0.57
  recA Streptococcus pneumoniae Rx1

59.813

95.252

0.57
  recA Streptococcus pneumoniae D39

59.813

95.252

0.57
  recA Streptococcus pneumoniae TIGR4

59.813

95.252

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.839

100

0.555
  recA Streptococcus mutans UA159

58.255

95.252

0.555

Multiple sequence alignment