Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C7M58_RS08810 Genome accession   NZ_CP027779
Coordinates   1882406..1883464 (-) Length   352 a.a.
NCBI ID   WP_030035633.1    Uniprot ID   A0A0S6U7T2
Organism   Clostridium botulinum strain RF5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1877406..1888464
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M58_RS08785 (C7M58_08830) - 1877555..1877911 (-) 357 WP_106900166.1 SMR family transporter -
  C7M58_RS08790 (C7M58_08835) - 1877908..1879191 (-) 1284 WP_106900165.1 glycosyltransferase family 39 protein -
  C7M58_RS08795 (C7M58_08840) - 1879210..1880076 (-) 867 WP_106900164.1 decaprenyl-phosphate phosphoribosyltransferase -
  C7M58_RS08800 (C7M58_08845) - 1880232..1880492 (-) 261 WP_003362540.1 stage V sporulation protein S -
  C7M58_RS08805 (C7M58_08850) rny 1880631..1882172 (-) 1542 WP_106900163.1 ribonuclease Y -
  C7M58_RS08810 (C7M58_08855) recA 1882406..1883464 (-) 1059 WP_030035633.1 recombinase RecA Machinery gene
  C7M58_RS08815 (C7M58_08860) pgsA 1883614..1884198 (-) 585 WP_030035634.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C7M58_RS08820 (C7M58_08865) rimO 1884182..1885519 (-) 1338 WP_106900162.1 30S ribosomal protein S12 methylthiotransferase RimO -
  C7M58_RS08825 (C7M58_08870) - 1885614..1887890 (-) 2277 WP_106900161.1 DNA translocase FtsK -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38256.89 Da        Isoelectric Point: 6.5213

>NTDB_id=280545 C7M58_RS08810 WP_030035633.1 1882406..1883464(-) (recA) [Clostridium botulinum strain RF5]
MANKVNPEKLKAIEAAMGQIEKQFGKGSIMKLGEDSILNVESISTGSLDLDIALGIGGVPRGRIIEIFGPESSGKTTVAL
HILAEAQKIGGAAAFIDAEHALDPAYARNLGVDIDNLIVSQPDTGEQALEITEALVRSGAVDVIVVDSVAALVPRAEIEG
EMGDTHVGLQARLMSQALRKLAGSINKSKCVAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRRIDSIKQGDQI
LGNRTRVKINKNKVAPPFKMAEFDIMYNEGISKVGNILDVGVREELVEKSGSWFSYKDTRLGQGRENAKQFLKDNMNIAL
EIENTIRKKHDLPVVDAKNLNIENKKEDNKEG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=280545 C7M58_RS08810 WP_030035633.1 1882406..1883464(-) (recA) [Clostridium botulinum strain RF5]
TTGGCAAACAAAGTTAATCCAGAAAAATTAAAAGCCATAGAAGCAGCTATGGGACAAATAGAAAAACAATTTGGAAAAGG
TTCTATAATGAAACTTGGAGAAGATAGTATATTAAACGTAGAATCCATATCCACAGGAAGCTTAGATTTAGATATAGCAT
TAGGTATAGGTGGAGTTCCTAGAGGAAGAATAATAGAAATATTTGGACCAGAGTCCTCAGGTAAAACCACTGTAGCACTT
CATATATTAGCAGAAGCACAAAAGATAGGCGGGGCAGCAGCTTTTATAGATGCAGAACATGCTTTAGATCCAGCCTATGC
TAGAAATTTAGGCGTTGATATAGACAACCTAATAGTTTCTCAACCAGATACAGGAGAGCAAGCATTAGAAATTACAGAAG
CTTTAGTAAGATCTGGGGCAGTAGACGTTATAGTTGTAGACTCCGTAGCAGCCTTAGTTCCTAGAGCAGAAATAGAAGGA
GAAATGGGAGATACTCATGTAGGCCTTCAGGCAAGGCTTATGTCTCAAGCTCTAAGAAAATTAGCAGGTTCTATAAATAA
ATCTAAATGTGTGGCTATATTCATAAACCAATTAAGAGAAAAAGTAGGTATAATGTTTGGGAATCCAGAAACAACTCCTG
GTGGAAGAGCATTAAAATTCTATTCTTCTGTTAGACTAGATGTAAGAAGAATAGATTCTATAAAACAAGGTGATCAAATC
TTGGGAAATAGAACAAGAGTAAAAATAAATAAAAATAAAGTAGCACCTCCATTTAAAATGGCAGAATTTGATATCATGTA
TAATGAAGGAATATCAAAGGTAGGAAATATATTAGATGTAGGTGTTAGAGAAGAGCTAGTTGAAAAAAGTGGTTCTTGGT
TCTCTTATAAAGACACAAGATTAGGACAAGGAAGAGAAAATGCAAAACAATTTTTAAAAGATAACATGAATATAGCTTTA
GAGATAGAAAATACTATAAGAAAAAAGCATGATTTACCAGTTGTTGATGCAAAAAACCTAAATATAGAGAATAAAAAAGA
AGATAATAAGGAAGGATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(11-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S6U7T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

71.651

91.193

0.653
  recA Streptococcus pneumoniae TIGR4

61.905

100

0.628
  recA Streptococcus pneumoniae Rx1

61.905

100

0.628
  recA Streptococcus pneumoniae D39

61.905

100

0.628
  recA Streptococcus pneumoniae R6

61.905

100

0.628
  recA Streptococcus mitis NCTC 12261

62.216

100

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

63.557

97.443

0.619
  recA Streptococcus mitis SK321

63.69

95.455

0.608
  recA Glaesserella parasuis strain SC1401

64.615

92.33

0.597
  recA Streptococcus mutans UA159

62.202

95.455

0.594
  recA Pseudomonas stutzeri DSM 10701

64.798

91.193

0.591
  recA Streptococcus pyogenes NZ131

62.462

94.602

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.727

93.75

0.588
  recA Helicobacter pylori 26695

63.385

92.33

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.58

92.045

0.585
  recA Neisseria gonorrhoeae MS11

64.174

91.193

0.585
  recA Neisseria gonorrhoeae MS11

64.174

91.193

0.585
  recA Neisseria gonorrhoeae strain FA1090

64.174

91.193

0.585
  recA Lactococcus lactis subsp. cremoris KW2

61.012

95.455

0.582
  recA Vibrio cholerae strain A1552

64.062

90.909

0.582
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.062

90.909

0.582
  recA Helicobacter pylori strain NCTC11637

62.769

92.33

0.58
  recA Ralstonia pseudosolanacearum GMI1000

65.696

87.784

0.577
  recA Acinetobacter baumannii D1279779

63.24

91.193

0.577
  recA Acinetobacter baylyi ADP1

62.617

91.193

0.571
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.625

90.909

0.551

Multiple sequence alignment