Detailed information NTG0028049

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: DNO_RS01395
• Genome accession: NC_009446
• Coordinates: 306280..307332 (-)
• Length: 350 a.a.
• NCBI ID: WP_012030632.1
• Uniprot ID: A5EW90
• Organism: Dichelobacter nodosus VCS1703A
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	282708..307332	306280..307332	within	0

Gene organization within MGE regions

Location: 282708..307332

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DNO_RS01255 (DNO_0257)	-	282708..283427 (-)	720	WP_012030604.1	ABC transporter ATP-binding protein	-
DNO_RS01260 (DNO_0258)	-	283630..284730 (-)	1101	WP_012030605.1	hypothetical protein	-
DNO_RS01265 (DNO_0259)	-	285019..285615 (+)	597	WP_012030606.1	cation transporter	-
DNO_RS01270 (DNO_0260)	-	285713..286183 (+)	471	WP_012030607.1	Panacea domain-containing protein	-
DNO_RS07030 (DNO_0261)	-	286380..286565 (+)	186	WP_012030608.1	hypothetical protein	-
DNO_RS01275 (DNO_0263)	-	286748..287446 (-)	699	WP_012030610.1	helix-turn-helix transcriptional regulator	-
DNO_RS06735 (DNO_0264)	-	287638..288474 (-)	837	WP_049752472.1	site-specific integrase	-
DNO_RS01285	-	288464..288850 (-)	387	WP_041729399.1	Arm DNA-binding domain-containing protein	-
DNO_RS01290 (DNO_0265)	-	289759..290040 (-)	282	WP_012030611.1	virulence protein	-
DNO_RS01295 (DNO_0266)	-	290906..292216 (-)	1311	WP_012030612.1	virulence-associated E family protein	-
DNO_RS01300 (DNO_0267)	-	292206..292553 (-)	348	WP_012030613.1	hypothetical protein	-
DNO_RS01305 (DNO_0269)	-	292557..292778 (-)	222	WP_012030615.1	hypothetical protein	-
DNO_RS01310 (DNO_0271)	-	293128..293475 (+)	348	WP_012030616.1	HigA family addiction module antitoxin	-
DNO_RS01315 (DNO_0270)	-	293468..293647 (-)	180	WP_041729402.1	hypothetical protein	-
DNO_RS01320 (DNO_0272)	-	293791..294117 (-)	327	WP_012030618.1	HigA family addiction module antitoxin	-
DNO_RS01325 (DNO_0273)	-	294127..294402 (-)	276	WP_012030619.1	type II toxin-antitoxin system RelE/ParE family toxin	-
DNO_RS01330 (DNO_0274)	-	295301..295660 (+)	360	WP_012030620.1	type II toxin-antitoxin system RelE/ParE family toxin	-
DNO_RS01335 (DNO_0275)	-	295673..295981 (+)	309	WP_012030621.1	HigA family addiction module antitoxin	-
DNO_RS01340 (DNO_0276)	-	296317..296547 (+)	231	WP_012030622.1	antitoxin	-
DNO_RS01345 (DNO_0277)	-	296550..296951 (+)	402	WP_119185609.1	type II toxin-antitoxin system VapC family toxin	-
DNO_RS01350 (DNO_0278)	-	297073..297354 (-)	282	WP_012030611.1	virulence protein	-
DNO_RS01355 (DNO_0279)	-	297992..299305 (-)	1314	WP_012030624.1	virulence-associated E family protein	-
DNO_RS01360 (DNO_0280)	-	299401..299607 (-)	207	WP_012030625.1	hypothetical protein	-
DNO_RS01365 (DNO_0282)	-	299986..301191 (-)	1206	WP_012030627.1	phage integrase central domain-containing protein	-
DNO_RS01375 (DNO_0284)	csrA	301542..301736 (-)	195	WP_012030628.1	carbon storage regulator CsrA	-
DNO_RS01380 (DNO_0285)	-	301850..303091 (-)	1242	WP_012030629.1	aspartate kinase	-
DNO_RS01385 (DNO_0286)	alaS	303096..305708 (-)	2613	WP_041729770.1	alanine--tRNA ligase	-
DNO_RS01390 (DNO_0287)	-	305817..306293 (-)	477	WP_041729409.1	regulatory protein RecX	-
DNO_RS01395 (DNO_0288)	recA	306280..307332 (-)	1053	WP_012030632.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 350 a.a.
• Molecular weight: 38083.47 Da
• Isoelectric Point: 5.0714

>NTDB_id=28049 DNO_RS01395 WP_012030632.1 306280..307332(-) (recA) [Dichelobacter nodosus VCS1703A]
MNEEQKKALTAVLTQLDKQFGKGTVMRLGEQVAAHDIQAISTGSLTLDIALGIGGLPKGRIVEIYGPESSGKTTMMLHVI
AEAQKNGGTAAFIDAEHALDPIYARKLGVNTDDLYVTQPDTGEQALEICDALVRSGAFDVIVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRANTLVVFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRIGSIKEGDEVLGN
ETRVKVVKNKVAPPFKQAEFDILYGQGVSREGEIIQLAVNADIMQKSGAWYSYRDEKIGQGKEKVRLYLKEHPDVAQEIE
TKIREKFIGGELHLPDAAGDEIDTSINDEE

Nucleotide

• Length: 1053 bp

>NTDB_id=28049 DNO_RS01395 WP_012030632.1 306280..307332(-) (recA) [Dichelobacter nodosus VCS1703A]
ATGAATGAAGAACAGAAAAAAGCATTAACCGCCGTTTTAACGCAATTAGATAAACAATTTGGCAAAGGAACCGTGATGCG
TTTGGGCGAGCAAGTTGCCGCGCACGATATTCAAGCCATTTCTACGGGTTCATTAACGCTCGATATTGCGCTTGGCATCG
GCGGATTGCCTAAAGGACGCATCGTTGAAATCTACGGGCCTGAATCTTCGGGAAAAACTACGATGATGTTACACGTCATC
GCTGAAGCGCAAAAAAACGGCGGCACGGCAGCATTTATCGATGCCGAACACGCATTAGATCCGATTTATGCCCGAAAATT
AGGCGTTAATACCGATGATTTATACGTCACACAACCCGATACCGGCGAACAAGCGTTAGAAATTTGCGATGCTTTAGTGC
GCAGCGGCGCGTTTGACGTTATCGTGGTTGATTCCGTTGCCGCGTTAACGCCAAAAGCAGAAATTGAAGGCGAAATGGGC
GATTCTCACGTTGGTTTACAAGCGCGCTTGATGAGTCAAGCTTTGCGCAAATTAACCGGAAATATTAAGCGCGCCAATAC
GCTCGTTGTTTTTATTAACCAAATCCGCATGAAAATTGGCGTTATGTTTGGTTCTCCAGAAACAACCACCGGCGGCAATG
CGCTGAAATTTTACGCTTCCGTACGTATGGATATCCGCCGCATCGGTTCAATTAAAGAAGGCGACGAAGTCCTCGGTAAT
GAAACGCGCGTAAAAGTCGTGAAAAACAAAGTAGCGCCGCCATTTAAGCAAGCAGAATTTGATATTTTATACGGTCAAGG
CGTTTCACGCGAAGGGGAAATTATTCAACTTGCCGTTAATGCCGATATCATGCAAAAATCCGGCGCGTGGTACAGTTACC
GCGATGAAAAAATCGGACAAGGTAAAGAAAAAGTACGGCTTTATTTAAAAGAACACCCCGACGTCGCACAAGAAATTGAA
ACGAAAATCCGCGAAAAATTTATCGGCGGTGAATTGCATTTACCTGATGCCGCCGGCGATGAAATCGATACCTCAATCAA
TGATGAAGAATGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-269)

3D structure

• AlphaFold DB: A5EW90

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	74.32	94.571	0.703
recA	Acinetobacter baumannii D1279779	73.171	93.714	0.686
recA	Acinetobacter baylyi ADP1	73.171	93.714	0.686
recA	Neisseria gonorrhoeae MS11	69.679	98	0.683
recA	Neisseria gonorrhoeae MS11	69.679	98	0.683
recA	Neisseria gonorrhoeae strain FA1090	69.679	98	0.683
recA	Ralstonia pseudosolanacearum GMI1000	72.171	93.429	0.674
recA	Vibrio cholerae strain A1552	70.393	94.571	0.666
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70.393	94.571	0.666
recA	Glaesserella parasuis strain SC1401	71.118	92	0.654
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	67.674	94.571	0.64
recA	Helicobacter pylori strain NCTC11637	62.717	98.857	0.62
recA	Helicobacter pylori 26695	62.717	98.857	0.62
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	66.769	92.857	0.62
recA	Bacillus subtilis subsp. subtilis str. 168	64.198	92.571	0.594
recA	Streptococcus mitis SK321	58.757	100	0.594
recA	Streptococcus mitis NCTC 12261	59.143	100	0.591
recA	Latilactobacillus sakei subsp. sakei 23K	63.385	92.857	0.589
recA	Streptococcus pyogenes NZ131	61.631	94.571	0.583
recA	Streptococcus pneumoniae D39	61.89	93.714	0.58
recA	Streptococcus pneumoniae Rx1	61.89	93.714	0.58
recA	Streptococcus pneumoniae R6	61.89	93.714	0.58
recA	Streptococcus pneumoniae TIGR4	61.89	93.714	0.58
recA	Lactococcus lactis subsp. cremoris KW2	61.846	92.857	0.574
recA	Streptococcus mutans UA159	60.182	94	0.566
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	60.87	92	0.56