Detailed information NTG0280489

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: C4F17_RS19600
• Genome accession: NZ_CP027773
• Coordinates: 4239951..4241057 (+)
• Length: 368 a.a.
• NCBI ID: WP_081268704.1
• Uniprot ID: -
• Organism: Variovorax sp. PMC12
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 4234951..4246057

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4F17_RS19570 (C4F17_19570)	-	4235381..4236013 (+)	633	WP_106936356.1	SET domain-containing protein-lysine N-methyltransferase	-
C4F17_RS19575 (C4F17_19575)	-	4236016..4236828 (+)	813	WP_106936357.1	biotin--[acetyl-CoA-carboxylase] ligase	-
C4F17_RS19580 (C4F17_19580)	-	4236842..4237084 (+)	243	WP_106936358.1	sporulation protein	-
C4F17_RS19585 (C4F17_19585)	-	4237094..4238536 (-)	1443	WP_081268700.1	sensor histidine kinase	-
C4F17_RS19590 (C4F17_19590)	-	4238574..4239248 (-)	675	WP_081268702.1	response regulator transcription factor	-
C4F17_RS19595 (C4F17_19595)	-	4239321..4239806 (-)	486	WP_106936359.1	MarR family winged helix-turn-helix transcriptional regulator	-
C4F17_RS19600 (C4F17_19600)	recA	4239951..4241057 (+)	1107	WP_081268704.1	recombinase RecA	Machinery gene
C4F17_RS19605 (C4F17_19605)	recX	4241106..4241567 (+)	462	WP_081268705.1	recombination regulator RecX	-
C4F17_RS19610 (C4F17_19610)	-	4241548..4241982 (+)	435	WP_081268706.1	polyketide cyclase	-
C4F17_RS19615 (C4F17_19615)	-	4241992..4243101 (-)	1110	WP_106936360.1	mandelate racemase/muconate lactonizing enzyme family protein	-
C4F17_RS19620 (C4F17_19620)	-	4243107..4243928 (-)	822	WP_106936361.1	transporter substrate-binding domain-containing protein	-
C4F17_RS19625 (C4F17_19625)	-	4243979..4244707 (-)	729	WP_081268709.1	amino acid ABC transporter ATP-binding protein	-
C4F17_RS19630 (C4F17_19630)	-	4244691..4245338 (-)	648	WP_106936362.1	amino acid ABC transporter permease	-
C4F17_RS19635 (C4F17_19635)	-	4245364..4246047 (-)	684	WP_106936363.1	amino acid ABC transporter permease	-

Sequence

Protein

• Length: 368 a.a.
• Molecular weight: 39171.00 Da
• Isoelectric Point: 5.3886

>NTDB_id=280489 C4F17_RS19600 WP_081268704.1 4239951..4241057(+) (recA) [Variovorax sp. PMC12]
MDAVVKGASISVANSEKAKALQAALAQIEKQFGKGTIMRLGEGEALEDIQVVSTGSLGLDIALGVGGLPRGRVIEIYGPE
SSGKTTLTLQVIAAMQKQAGTCAFVDAEHALDVQYAQKLGVNLSDLLISQPDTGEQALEIVDSLVRSGAVDLIVVDSVAA
LTPKAEIEGEMGDSLPGLQARLMSQALRKLTATIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRI
GTIKKGDEAIGNETKVKVVKNKVSPPFKTAEFDILFGEGISREGEIIDMGVTAKIVDKSGAWYAYNGEKIGQGRDNAREF
LRENPELSREIENKVRESLGIPLLAADAGSTPEKPQKAAKAEKADKGE

Nucleotide

• Length: 1107 bp

>NTDB_id=280489 C4F17_RS19600 WP_081268704.1 4239951..4241057(+) (recA) [Variovorax sp. PMC12]
ATGGACGCAGTCGTCAAGGGCGCAAGCATCTCGGTCGCCAACAGTGAAAAAGCCAAGGCGCTGCAAGCCGCGCTGGCCCA
GATCGAAAAGCAGTTCGGCAAGGGCACGATCATGCGGCTCGGCGAAGGCGAGGCGCTGGAAGACATCCAGGTGGTCTCCA
CCGGTTCGCTGGGCCTGGACATCGCGCTGGGCGTCGGCGGCCTGCCGCGCGGCCGCGTCATCGAAATCTACGGCCCTGAA
TCCTCGGGCAAGACCACGCTCACGCTGCAGGTCATCGCCGCCATGCAGAAGCAGGCCGGCACCTGCGCCTTCGTCGACGC
AGAACACGCCCTCGACGTGCAATACGCCCAGAAGCTCGGCGTCAACCTGTCCGACCTGCTGATCAGCCAGCCCGACACCG
GCGAACAGGCCCTCGAAATCGTCGATTCGCTGGTGCGCTCCGGCGCGGTGGACCTGATCGTGGTCGACTCGGTCGCCGCG
CTCACGCCCAAGGCCGAAATCGAAGGCGAAATGGGCGACTCGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCT
GCGCAAGCTCACCGCCACCATCAAGAAGACCAACTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGA
TGTTCGGTTCGCCCGAAACCACCACTGGCGGCAATGCGCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCGCCGCATC
GGCACCATCAAGAAGGGCGACGAGGCCATCGGCAACGAAACCAAGGTGAAGGTGGTGAAGAACAAGGTCTCGCCCCCGTT
CAAGACGGCGGAGTTCGACATCCTGTTCGGCGAAGGCATCAGCCGCGAAGGCGAGATCATCGACATGGGCGTGACCGCCA
AGATCGTCGACAAGTCGGGCGCCTGGTACGCCTACAACGGCGAGAAGATCGGCCAGGGCCGCGACAACGCCCGCGAGTTC
CTGCGCGAGAACCCCGAGCTGTCGCGCGAGATCGAGAACAAGGTGCGCGAGTCGCTGGGCATTCCGCTGCTGGCAGCCGA
TGCCGGCTCCACGCCCGAGAAGCCGCAGAAGGCCGCCAAGGCCGAGAAGGCGGACAAGGGCGAGTAA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (19-281)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	81.525	92.663	0.755
recA	Pseudomonas stutzeri DSM 10701	70.796	92.12	0.652
recA	Glaesserella parasuis strain SC1401	67.139	95.924	0.644
recA	Acinetobacter baylyi ADP1	72.086	88.587	0.639
recA	Neisseria gonorrhoeae MS11	71.212	89.674	0.639
recA	Neisseria gonorrhoeae MS11	71.212	89.674	0.639
recA	Neisseria gonorrhoeae strain FA1090	71.212	89.674	0.639
recA	Acinetobacter baumannii D1279779	71.472	88.587	0.633
recA	Vibrio cholerae O1 biovar El Tor strain E7946	70.213	89.402	0.628
recA	Vibrio cholerae strain A1552	70.213	89.402	0.628
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.085	89.402	0.609
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	66.465	89.946	0.598
recA	Helicobacter pylori 26695	65.549	89.13	0.584
recA	Helicobacter pylori strain NCTC11637	65.549	89.13	0.584
recA	Bacillus subtilis subsp. subtilis str. 168	65.138	88.859	0.579
recA	Streptococcus mutans UA159	59.437	96.467	0.573
recA	Latilactobacillus sakei subsp. sakei 23K	62.424	89.674	0.56
recA	Streptococcus pyogenes NZ131	62.006	89.402	0.554
recA	Lactococcus lactis subsp. cremoris KW2	61.329	89.946	0.552
recA	Streptococcus pneumoniae D39	61.329	89.946	0.552
recA	Streptococcus pneumoniae R6	61.329	89.946	0.552
recA	Streptococcus pneumoniae TIGR4	61.329	89.946	0.552
recA	Streptococcus pneumoniae Rx1	61.329	89.946	0.552
recA	Streptococcus mitis SK321	61.027	89.946	0.549
recA	Streptococcus mitis NCTC 12261	61.027	89.946	0.549
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	61.371	87.228	0.535