Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C4J83_RS06190 | Genome accession | NZ_CP027762 |
| Coordinates | 1371534..1372592 (+) | Length | 352 a.a. |
| NCBI ID | WP_003189042.1 | Uniprot ID | A0A7Y7ZLK5 |
| Organism | Pseudomonas sp. LBUM920 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1340938..1370821 | 1371534..1372592 | flank | 713 |
Gene organization within MGE regions
Location: 1340938..1372592
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J83_RS05980 (C4J83_1176) | - | 1340938..1341672 (+) | 735 | WP_119738633.1 | XRE family transcriptional regulator | - |
| C4J83_RS05985 | - | 1341651..1341980 (+) | 330 | WP_124416549.1 | hypothetical protein | - |
| C4J83_RS05990 (C4J83_1178) | - | 1342269..1342607 (+) | 339 | WP_106577252.1 | phage holin family protein | - |
| C4J83_RS05995 (C4J83_1179) | - | 1342631..1343146 (+) | 516 | WP_119738635.1 | hypothetical protein | - |
| C4J83_RS06000 (C4J83_1180) | - | 1343150..1343761 (+) | 612 | WP_124416550.1 | phage baseplate assembly protein V | - |
| C4J83_RS06005 (C4J83_1181) | - | 1343771..1344103 (+) | 333 | WP_124416551.1 | phage baseplate protein | - |
| C4J83_RS06010 (C4J83_1182) | - | 1344100..1345095 (+) | 996 | WP_124416552.1 | baseplate J/gp47 family protein | - |
| C4J83_RS06015 (C4J83_1183) | - | 1345092..1345721 (+) | 630 | WP_064450998.1 | phage tail protein I | - |
| C4J83_RS06020 (C4J83_1184) | - | 1345722..1347179 (+) | 1458 | WP_082895834.1 | phage tail protein | - |
| C4J83_RS06025 (C4J83_1185) | - | 1347181..1347615 (+) | 435 | WP_064450999.1 | tail fiber assembly protein | - |
| C4J83_RS06030 (C4J83_1186) | - | 1347684..1347875 (+) | 192 | WP_124416553.1 | hypothetical protein | - |
| C4J83_RS06035 (C4J83_1187) | - | 1347878..1349044 (+) | 1167 | WP_124416554.1 | phage tail protein | - |
| C4J83_RS06040 (C4J83_1188) | - | 1349044..1349550 (+) | 507 | WP_124416555.1 | phage major tail tube protein | - |
| C4J83_RS06045 (C4J83_1189) | - | 1349733..1350305 (+) | 573 | WP_124416556.1 | phage tail assembly protein | - |
| C4J83_RS06050 (C4J83_1191) | - | 1350433..1352376 (+) | 1944 | WP_124416557.1 | glycine zipper domain-containing protein | - |
| C4J83_RS06055 (C4J83_1192) | - | 1352376..1352759 (+) | 384 | WP_124416558.1 | phage tail protein | - |
| C4J83_RS06060 (C4J83_1193) | - | 1352752..1352964 (+) | 213 | WP_124416559.1 | tail protein X | - |
| C4J83_RS06065 (C4J83_1194) | - | 1352974..1353984 (+) | 1011 | WP_124416560.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| C4J83_RS06070 (C4J83_1195) | - | 1354066..1354257 (+) | 192 | WP_124416561.1 | hypothetical protein | - |
| C4J83_RS06075 (C4J83_1196) | - | 1354339..1354830 (+) | 492 | WP_104995658.1 | phage tail tube protein | - |
| C4J83_RS06080 (C4J83_1197) | - | 1354839..1355189 (+) | 351 | WP_124416562.1 | phage tail assembly chaperone family protein, TAC | - |
| C4J83_RS06085 (C4J83_1198) | - | 1355219..1355473 (+) | 255 | WP_094949899.1 | hypothetical protein | - |
| C4J83_RS06090 (C4J83_1199) | - | 1355537..1356766 (+) | 1230 | WP_124416563.1 | phage tail tape measure C-terminal domain-containing protein | - |
| C4J83_RS06095 (C4J83_1200) | - | 1356795..1357133 (+) | 339 | WP_124416564.1 | phage tail protein | - |
| C4J83_RS06100 (C4J83_1201) | - | 1357193..1357876 (+) | 684 | WP_124416565.1 | phage minor tail protein L | - |
| C4J83_RS06105 (C4J83_1202) | - | 1357879..1358652 (+) | 774 | WP_124416566.1 | C40 family peptidase | - |
| C4J83_RS06110 (C4J83_1203) | - | 1358686..1359312 (+) | 627 | WP_124416567.1 | tail assembly protein | - |
| C4J83_RS06115 (C4J83_1204) | - | 1359344..1359952 (+) | 609 | WP_124416568.1 | tail assembly protein | - |
| C4J83_RS06120 (C4J83_1205) | - | 1360012..1363971 (+) | 3960 | WP_177416145.1 | phage tail protein | - |
| C4J83_RS06125 | - | 1363968..1364297 (+) | 330 | WP_124416569.1 | hypothetical protein | - |
| C4J83_RS06130 (C4J83_1207) | - | 1364294..1364977 (+) | 684 | WP_124416570.1 | hypothetical protein | - |
| C4J83_RS06135 (C4J83_1208) | - | 1365084..1366112 (+) | 1029 | WP_124416571.1 | pyocin knob domain-containing protein | - |
| C4J83_RS06140 (C4J83_1209) | - | 1366163..1366441 (+) | 279 | WP_124416572.1 | hypothetical protein | - |
| C4J83_RS06145 (C4J83_1210) | - | 1366508..1367611 (+) | 1104 | WP_124416573.1 | pyocin knob domain-containing protein | - |
| C4J83_RS06150 (C4J83_1211) | - | 1367626..1367931 (+) | 306 | WP_124416574.1 | hypothetical protein | - |
| C4J83_RS06155 (C4J83_1212) | - | 1367921..1368193 (+) | 273 | WP_124416575.1 | hypothetical protein | - |
| C4J83_RS06160 (C4J83_1213) | - | 1368263..1369348 (+) | 1086 | WP_124416576.1 | pyocin knob domain-containing protein | - |
| C4J83_RS06165 (C4J83_1214) | - | 1369348..1369677 (+) | 330 | WP_124416577.1 | hypothetical protein | - |
| C4J83_RS06170 (C4J83_1215) | - | 1369664..1369873 (+) | 210 | WP_124416578.1 | hypothetical protein | - |
| C4J83_RS06175 (C4J83_1216) | - | 1369930..1370355 (+) | 426 | WP_124416579.1 | structural protein | - |
| C4J83_RS06180 | - | 1370388..1370868 (+) | 481 | Protein_1184 | lysis system i-spanin subunit Rz | - |
| C4J83_RS06185 (C4J83_1219) | - | 1370950..1371450 (+) | 501 | WP_106577235.1 | CinA family protein | - |
| C4J83_RS06190 (C4J83_1220) | recA | 1371534..1372592 (+) | 1059 | WP_003189042.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37580.12 Da Isoelectric Point: 5.3036
>NTDB_id=280312 C4J83_RS06190 WP_003189042.1 1371534..1372592(+) (recA) [Pseudomonas sp. LBUM920]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTAAPDVKAAANREPVEEVEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=280312 C4J83_RS06190 WP_003189042.1 1371534..1372592(+) (recA) [Pseudomonas sp. LBUM920]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGATATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGG
CGTCAACGTAGACGACCTGCTCGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCTT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGTGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACAACG
GCAGCAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTCGAGAAG
CAGATTCGCGACAAGTTGCTGACCGCAGCGCCAGACGTGAAAGCTGCTGCCAATCGCGAGCCGGTGGAAGAAGTCGAAGA
AGCTGATACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATTTCCACTGGCTCTCTGGGTCTGGATATCGCACTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAAATCTACGGCCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCGCAAAAAATGGGCGCCACCTGTGCGTTCGTCGACGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAACTGGG
CGTCAACGTAGACGACCTGCTCGTTTCCCAGCCGGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCAGCCCTGGTACCGAAAGCTGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGTAACATCAAGAACGCCAACTGCTT
GGTGATCTTCATCAACCAGATCCGTATGAAGATCGGCGTGATGTTCGGCAGCCCGGAAACCACCACTGGTGGTAACGCGT
TGAAGTTCTACGCTTCGGTCCGTCTGGACATCCGTCGTACTGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGCAGTGAA
ACCCGCGTTAAAGTCGTGAAGAACAAAGTGGCTCCGCCTTTCCGTCAGGCTGAGTTCCAGATTCTCTACGGCAAGGGTAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTCGTCGAGAAGTCCGGCGCCTGGTATGCCTACAACG
GCAGCAAGATTGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTCGAGAAG
CAGATTCGCGACAAGTTGCTGACCGCAGCGCCAGACGTGAAAGCTGCTGCCAATCGCGAGCCGGTGGAAGAAGTCGAAGA
AGCTGATACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.