Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | C4J85_RS05810 | Genome accession | NZ_CP027760 |
| Coordinates | 1297124..1298182 (+) | Length | 352 a.a. |
| NCBI ID | WP_005785454.1 | Uniprot ID | A0A0R3ALL9 |
| Organism | Pseudomonas sp. R4-34-07 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1262742..1298182 | 1297124..1298182 | within | 0 |
Gene organization within MGE regions
Location: 1262742..1298182
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J85_RS05590 (C4J85_1106) | - | 1262742..1264160 (-) | 1419 | WP_164487851.1 | IS1182 family transposase | - |
| C4J85_RS05595 (C4J85_1107) | fdxA | 1264270..1264593 (-) | 324 | WP_124361524.1 | ferredoxin FdxA | - |
| C4J85_RS05600 (C4J85_1108) | mutS | 1264736..1267327 (-) | 2592 | WP_124366016.1 | DNA mismatch repair protein MutS | - |
| C4J85_RS05605 (C4J85_1109) | - | 1267511..1267882 (-) | 372 | WP_124366017.1 | hypothetical protein | - |
| C4J85_RS05610 (C4J85_1110) | - | 1267875..1268363 (-) | 489 | WP_124366018.1 | Panacea domain-containing protein | - |
| C4J85_RS05615 (C4J85_1111) | - | 1268626..1269360 (+) | 735 | WP_124361528.1 | XRE family transcriptional regulator | - |
| C4J85_RS05620 (C4J85_1114) | - | 1269950..1270288 (+) | 339 | WP_124357270.1 | phage holin family protein | - |
| C4J85_RS05625 (C4J85_1115) | - | 1270308..1270823 (+) | 516 | WP_124409171.1 | hypothetical protein | - |
| C4J85_RS05630 (C4J85_1116) | - | 1270827..1271435 (+) | 609 | WP_124409172.1 | phage baseplate assembly protein V | - |
| C4J85_RS05635 (C4J85_1117) | - | 1271448..1271780 (+) | 333 | WP_124361531.1 | phage baseplate protein | - |
| C4J85_RS05640 (C4J85_1118) | - | 1271777..1272772 (+) | 996 | WP_124406413.1 | baseplate J/gp47 family protein | - |
| C4J85_RS05645 (C4J85_1119) | - | 1272769..1273407 (+) | 639 | WP_124409173.1 | phage tail protein I | - |
| C4J85_RS05650 (C4J85_1120) | - | 1273404..1273937 (+) | 534 | WP_124409174.1 | phage tail protein | - |
| C4J85_RS05655 (C4J85_1121) | - | 1273964..1274584 (+) | 621 | WP_124409175.1 | hypothetical protein | - |
| C4J85_RS05660 (C4J85_1122) | - | 1274597..1274854 (+) | 258 | WP_124409176.1 | tail fiber assembly protein | - |
| C4J85_RS27435 (C4J85_1123) | - | 1274940..1275113 (+) | 174 | WP_164484513.1 | hypothetical protein | - |
| C4J85_RS05665 (C4J85_1124) | - | 1275116..1276282 (+) | 1167 | WP_124409177.1 | phage tail protein | - |
| C4J85_RS05670 (C4J85_1125) | - | 1276282..1276788 (+) | 507 | WP_124409178.1 | phage major tail tube protein | - |
| C4J85_RS05675 (C4J85_1126) | - | 1276969..1277541 (+) | 573 | WP_124409179.1 | phage tail assembly protein | - |
| C4J85_RS05680 (C4J85_1128) | - | 1277669..1279489 (+) | 1821 | WP_124409180.1 | phage tail tape measure protein | - |
| C4J85_RS05685 (C4J85_1129) | - | 1279489..1279872 (+) | 384 | WP_124409181.1 | phage tail protein | - |
| C4J85_RS05690 (C4J85_1130) | - | 1279865..1280077 (+) | 213 | WP_124409182.1 | tail protein X | - |
| C4J85_RS05695 (C4J85_1131) | - | 1280087..1281097 (+) | 1011 | WP_124409183.1 | contractile injection system protein, VgrG/Pvc8 family | - |
| C4J85_RS05700 (C4J85_1132) | - | 1281171..1281362 (+) | 192 | WP_124409184.1 | hypothetical protein | - |
| C4J85_RS05705 (C4J85_1133) | - | 1281455..1281946 (+) | 492 | WP_124409185.1 | phage tail tube protein | - |
| C4J85_RS05710 (C4J85_1134) | - | 1281955..1282305 (+) | 351 | WP_124409186.1 | phage tail assembly chaperone family protein, TAC | - |
| C4J85_RS05715 (C4J85_1135) | - | 1282335..1282589 (+) | 255 | WP_043048867.1 | hypothetical protein | - |
| C4J85_RS05720 (C4J85_1136) | - | 1282652..1283830 (+) | 1179 | WP_124409187.1 | phage tail tape measure C-terminal domain-containing protein | - |
| C4J85_RS05725 (C4J85_1137) | - | 1283859..1284197 (+) | 339 | WP_124409188.1 | phage tail protein | - |
| C4J85_RS05730 (C4J85_1138) | - | 1284258..1284941 (+) | 684 | WP_124409189.1 | phage minor tail protein L | - |
| C4J85_RS05735 (C4J85_1139) | - | 1284944..1285717 (+) | 774 | WP_124409190.1 | C40 family peptidase | - |
| C4J85_RS05740 (C4J85_1140) | - | 1285751..1286380 (+) | 630 | WP_005785432.1 | tail assembly protein | - |
| C4J85_RS05745 (C4J85_1141) | - | 1286377..1287036 (+) | 660 | WP_228309406.1 | tail assembly protein | - |
| C4J85_RS05750 (C4J85_1142) | - | 1287096..1290947 (+) | 3852 | WP_124409191.1 | phage tail protein | - |
| C4J85_RS05755 | - | 1290944..1291225 (+) | 282 | WP_124409192.1 | hypothetical protein | - |
| C4J85_RS05760 (C4J85_1144) | - | 1291225..1291932 (+) | 708 | WP_124409193.1 | hypothetical protein | - |
| C4J85_RS05765 (C4J85_1145) | - | 1292043..1293146 (+) | 1104 | WP_124409194.1 | pyocin knob domain-containing protein | - |
| C4J85_RS05770 (C4J85_1146) | - | 1293146..1293466 (+) | 321 | WP_124409195.1 | hypothetical protein | - |
| C4J85_RS05775 | - | 1293456..1293728 (+) | 273 | WP_124409196.1 | hypothetical protein | - |
| C4J85_RS05780 (C4J85_1148) | - | 1293794..1294888 (+) | 1095 | WP_124409197.1 | hypothetical protein | - |
| C4J85_RS05785 (C4J85_1149) | - | 1294885..1295238 (+) | 354 | WP_124409198.1 | hypothetical protein | - |
| C4J85_RS05790 (C4J85_1150) | - | 1295231..1295422 (+) | 192 | WP_124409199.1 | hypothetical protein | - |
| C4J85_RS05795 (C4J85_1151) | - | 1295419..1295970 (+) | 552 | WP_124409200.1 | glycoside hydrolase family 19 protein | - |
| C4J85_RS05800 (C4J85_1152) | - | 1295958..1296458 (+) | 501 | WP_124366034.1 | lysis system i-spanin subunit Rz | - |
| C4J85_RS05805 (C4J85_1153) | - | 1296540..1297040 (+) | 501 | WP_124366035.1 | CinA family protein | - |
| C4J85_RS05810 (C4J85_1154) | recA | 1297124..1298182 (+) | 1059 | WP_005785454.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 37624.19 Da Isoelectric Point: 5.2997
>NTDB_id=280264 C4J85_RS05810 WP_005785454.1 1297124..1298182(+) (recA) [Pseudomonas sp. R4-34-07]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI
Nucleotide
Download Length: 1059 bp
>NTDB_id=280264 C4J85_RS05810 WP_005785454.1 1297124..1298182(+) (recA) [Pseudomonas sp. R4-34-07]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCAATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGCGCCACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTAGCCCCGCCTTTCCGCCAAGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCCCTGCGCCAGACGTCAAAGCCGCCGCCAACCGTGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCAATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATTGCC
CAGGCTCAGAAAATGGGCGCCACCTGCGCATTCGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGCCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTAGCCCCGCCTTTCCGCCAAGCAGAGTTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGCTGCACGGTTTTGTCGAGAAGTCCGGTGCCTGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAGTTCCTGGCAGACAACCCGGATATCGCCGCCACGCTTGAAAAG
CAGATTCGCGACAAGCTGCTGACCCCTGCGCCAGACGTCAAAGCCGCCGCCAACCGTGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA
Similar proteins
Only experimentally validated proteins are listed.