Detailed information NTG0280240

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: C4J86_RS06370
• Genome accession: NZ_CP027759
• Coordinates: 1434208..1435266 (+)
• Length: 352 a.a.
• NCBI ID: WP_005785454.1
• Uniprot ID: A0A0R3ALL9
• Organism: Pseudomonas sp. R2-7-07
• Function: homologous recombination (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Prophage	1418764..1435742	1434208..1435266	within	0

Gene organization within MGE regions

Location: 1418764..1435742

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C4J86_RS06265 (C4J86_1245)	-	1418764..1419252 (-)	489	WP_124366018.1	Panacea domain-containing protein	-
C4J86_RS06270 (C4J86_1246)	-	1419516..1420250 (+)	735	WP_124361528.1	XRE family transcriptional regulator	-
C4J86_RS06275 (C4J86_1248)	-	1420841..1421179 (+)	339	WP_124357270.1	phage holin family protein	-
C4J86_RS06280 (C4J86_1249)	-	1421199..1421714 (+)	516	WP_124369821.1	hypothetical protein	-
C4J86_RS06285 (C4J86_1250)	-	1421718..1422326 (+)	609	WP_124369822.1	phage baseplate assembly protein V	-
C4J86_RS06290 (C4J86_1251)	-	1422339..1422671 (+)	333	WP_124361531.1	phage baseplate protein	-
C4J86_RS06295 (C4J86_1252)	-	1422668..1423663 (+)	996	WP_124369823.1	baseplate J/gp47 family protein	-
C4J86_RS06300 (C4J86_1253)	-	1423660..1424298 (+)	639	WP_124369824.1	phage tail protein I	-
C4J86_RS06305 (C4J86_1254)	-	1424295..1424825 (+)	531	WP_124369825.1	hypothetical protein	-
C4J86_RS06310 (C4J86_1255)	-	1424874..1425656 (+)	783	WP_124369826.1	phage tail protein	-
C4J86_RS06315 (C4J86_1256)	-	1425659..1425961 (+)	303	WP_164487764.1	hypothetical protein	-
C4J86_RS26800 (C4J86_1257)	-	1426050..1426223 (+)	174	WP_164484513.1	hypothetical protein	-
C4J86_RS06320 (C4J86_1258)	-	1426226..1427392 (+)	1167	WP_124366027.1	phage tail protein	-
C4J86_RS06325 (C4J86_1259)	-	1427392..1427898 (+)	507	WP_124366028.1	phage major tail tube protein	-
C4J86_RS06330 (C4J86_1260)	-	1427951..1428532 (+)	582	WP_124361539.1	phage tail assembly protein	-
C4J86_RS06335 (C4J86_1262)	-	1428661..1430880 (+)	2220	WP_124369828.1	phage tail tape measure protein	-
C4J86_RS06340 (C4J86_1263)	-	1430880..1431263 (+)	384	WP_124369829.1	phage tail protein	-
C4J86_RS06345 (C4J86_1264)	-	1431256..1431468 (+)	213	WP_124361542.1	tail protein X	-
C4J86_RS06350 (C4J86_1265)	-	1431478..1432479 (+)	1002	WP_124369830.1	contractile injection system protein, VgrG/Pvc8 family	-
C4J86_RS06355 (C4J86_1266)	-	1432503..1433060 (+)	558	WP_124369831.1	glycoside hydrolase family 19 protein	-
C4J86_RS06360 (C4J86_1267)	-	1433048..1433542 (+)	495	WP_124369832.1	lysis system i-spanin subunit Rz	-
C4J86_RS06365 (C4J86_1268)	-	1433624..1434124 (+)	501	WP_124366035.1	CinA family protein	-
C4J86_RS06370 (C4J86_1269)	recA	1434208..1435266 (+)	1059	WP_005785454.1	recombinase RecA	Machinery gene
C4J86_RS06375 (C4J86_1270)	recX	1435275..1435742 (+)	468	WP_124366036.1	recombination regulator RecX	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37624.19 Da
• Isoelectric Point: 5.2997

>NTDB_id=280240 C4J86_RS06370 WP_005785454.1 1434208..1435266(+) (recA) [Pseudomonas sp. R2-7-07]
MDDNKKKALAAALGQIERQFGKGAVMRMGDHDRQAIPAISTGSLGLDIALGIGGLPKGRIVEIYGPESSGKTTLTLSVIA
QAQKMGATCAFVDAEHALDPEYAGKLGVNVDDLLVSQPDTGEQALEITDMLVRSNAIDVIVVDSVAALVPKAEIEGEMGD
MHVGLQARLMSQALRKITGNIKNANCLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAVKEGDEVVGSE
TRVKVVKNKVAPPFRQAEFQILYGKGIYLNGEMIDLGVLHGFVEKSGAWYAYNGSKIGQGKANSAKFLADNPDIAATLEK
QIRDKLLTPAPDVKAAANREPVDEMEEADTDI

Nucleotide

• Length: 1059 bp

>NTDB_id=280240 C4J86_RS06370 WP_005785454.1 1434208..1435266(+) (recA) [Pseudomonas sp. R2-7-07]
ATGGACGACAACAAGAAGAAAGCCTTGGCTGCGGCCCTGGGTCAGATCGAACGTCAATTCGGCAAGGGTGCCGTAATGCG
TATGGGCGATCACGACCGTCAGGCGATCCCGGCTATCTCCACTGGCTCTCTGGGTCTGGATATCGCGCTCGGCATTGGCG
GCCTGCCAAAAGGCCGTATCGTTGAGATCTACGGTCCTGAATCTTCCGGTAAAACCACCCTGACCCTGTCGGTGATCGCC
CAGGCTCAGAAAATGGGCGCCACCTGCGCATTTGTCGATGCCGAGCACGCCCTGGATCCTGAATACGCCGGCAAGCTGGG
CGTCAACGTCGACGACCTGCTGGTTTCCCAGCCAGACACCGGTGAGCAAGCCCTGGAAATCACCGACATGCTGGTGCGCT
CCAACGCCATCGACGTGATCGTGGTCGACTCCGTGGCTGCCCTGGTACCCAAGGCAGAAATCGAAGGCGAAATGGGCGAC
ATGCACGTGGGCCTGCAAGCCCGTCTGATGTCCCAGGCGCTGCGTAAAATCACCGGCAACATCAAGAACGCCAACTGCCT
GGTGATCTTCATCAACCAGATCCGTATGAAAATCGGTGTGATGTTCGGCAGCCCGGAAACCACCACCGGTGGTAACGCGC
TGAAGTTCTACGCTTCGGTTCGTCTGGATATCCGTCGTACCGGCGCGGTGAAGGAAGGTGACGAGGTTGTCGGTAGCGAA
ACCCGCGTCAAAGTCGTGAAGAACAAGGTAGCCCCGCCTTTCCGTCAGGCAGAATTCCAGATTCTTTATGGCAAAGGCAT
CTACCTGAACGGCGAGATGATCGACCTGGGCGTGTTGCACGGTTTTGTCGAGAAGTCCGGTGCATGGTATGCCTACAACG
GCAGCAAGATCGGTCAGGGCAAGGCCAACTCGGCCAAATTCCTGGCAGACAACCCGGATATCGCCGCCACGCTTGAGAAG
CAGATTCGCGACAAGCTGCTGACCCCTGCGCCAGACGTCAAAGCCGCCGCCAACCGTGAGCCGGTTGACGAGATGGAAGA
AGCCGACACTGACATCTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-267)

3D structure

• AlphaFold DB: A0A0R3ALL9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Pseudomonas stutzeri DSM 10701	87.5	100	0.875
recA	Acinetobacter baylyi ADP1	74.64	98.58	0.736
recA	Acinetobacter baumannii D1279779	73.178	97.443	0.713
recA	Vibrio cholerae O1 biovar El Tor strain E7946	75.076	93.466	0.702
recA	Vibrio cholerae strain A1552	75.076	93.466	0.702
recA	Glaesserella parasuis strain SC1401	69.143	99.432	0.688
recA	Ralstonia pseudosolanacearum GMI1000	68.571	99.432	0.682
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae MS11	72.222	92.045	0.665
recA	Neisseria gonorrhoeae strain FA1090	72.222	92.045	0.665
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	64.526	92.898	0.599
recA	Helicobacter pylori strain NCTC11637	59.943	100	0.599
recA	Helicobacter pylori 26695	59.375	100	0.594
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	61.677	94.886	0.585
recA	Bacillus subtilis subsp. subtilis str. 168	61.682	91.193	0.562
recA	Streptococcus mutans UA159	60	92.33	0.554
recA	Streptococcus pyogenes NZ131	58.232	93.182	0.543
recA	Streptococcus pneumoniae Rx1	58.589	92.614	0.543
recA	Streptococcus pneumoniae D39	58.589	92.614	0.543
recA	Streptococcus pneumoniae R6	58.589	92.614	0.543
recA	Streptococcus pneumoniae TIGR4	58.589	92.614	0.543
recA	Streptococcus mitis SK321	58.824	91.761	0.54
recA	Streptococcus mitis NCTC 12261	58.824	91.761	0.54
recA	Latilactobacillus sakei subsp. sakei 23K	58.879	91.193	0.537
recA	Lactococcus lactis subsp. cremoris KW2	57.276	91.761	0.526
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	56.79	92.045	0.523