Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PNUC_RS09510 Genome accession   NC_009379
Coordinates   1913680..1914771 (-) Length   363 a.a.
NCBI ID   WP_011903669.1    Uniprot ID   A4SZY2
Organism   Polynucleobacter asymbioticus QLW-P1DMWA-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1908680..1919771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PNUC_RS09485 (Pnuc_1828) - 1909463..1909975 (-) 513 WP_011903664.1 pilin -
  PNUC_RS09490 (Pnuc_1829) - 1910093..1910803 (-) 711 WP_011903665.1 TerC family protein -
  PNUC_RS09495 (Pnuc_1830) sucD 1910891..1911784 (-) 894 WP_011903666.1 succinate--CoA ligase subunit alpha -
  PNUC_RS09500 (Pnuc_1831) sucC 1911800..1912969 (-) 1170 WP_011903667.1 ADP-forming succinate--CoA ligase subunit beta -
  PNUC_RS09505 (Pnuc_1832) recX 1913157..1913675 (-) 519 WP_011903668.1 recombination regulator RecX -
  PNUC_RS09510 (Pnuc_1833) recA 1913680..1914771 (-) 1092 WP_011903669.1 recombinase RecA Machinery gene
  PNUC_RS09515 (Pnuc_1834) - 1914890..1915423 (-) 534 WP_011903670.1 DUF2878 domain-containing protein -
  PNUC_RS09520 (Pnuc_1835) - 1915705..1916781 (+) 1077 WP_011903671.1 hypothetical protein -
  PNUC_RS09525 (Pnuc_1836) - 1916778..1917407 (+) 630 WP_011903672.1 hypothetical protein -
  PNUC_RS09530 (Pnuc_1837) - 1917410..1917745 (+) 336 WP_011903673.1 hypothetical protein -
  PNUC_RS09535 (Pnuc_1838) - 1917738..1918142 (+) 405 WP_011903674.1 hypothetical protein -
  PNUC_RS09540 (Pnuc_1839) - 1918139..1918720 (-) 582 WP_011903675.1 site-specific integrase -
  PNUC_RS09545 (Pnuc_1840) - 1919113..1919307 (+) 195 WP_011903676.1 hypothetical protein -

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 38909.39 Da        Isoelectric Point: 4.8324

>NTDB_id=27926 PNUC_RS09510 WP_011903669.1 1913680..1914771(-) (recA) [Polynucleobacter asymbioticus QLW-P1DMWA-1]
MALDDKRKSASSEFEGMSGDKQKALTAALAQIEKQFGKGSIMRLGDAEISQDIQVVSSGSLGLDIALGVGGLARGRVIEI
YGPESSGKTTLTLHAIAEMQKLGGTCAFIDAEHALDVQYASRLGVDVNNLLISQPDTGEQALEIADALVRSGSIDLIVID
SVAALVPRAEIEGDMGDSLPGLQARLMSQALRKLTGAIKRTNTTVIFINQIRMKIGVMFGSPETTTGGNALKFYASMRLD
IRRIGSIKKGDEVVGNETRVKVVKNKVSPPFREAIFDIMYGAGISREGEIIDMGVEADIVDKSGSWYSYNGDRIGQGKDN
VREFLKENPAIAKDIEAKIREKLGVKSGSAVVTDVLSEEEEVE

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=27926 PNUC_RS09510 WP_011903669.1 1913680..1914771(-) (recA) [Polynucleobacter asymbioticus QLW-P1DMWA-1]
ATGGCCTTGGATGACAAAAGAAAATCAGCCTCCTCAGAATTTGAGGGAATGAGTGGAGACAAACAAAAAGCATTAACTGC
GGCTTTAGCGCAAATTGAAAAGCAATTTGGCAAAGGTTCAATCATGAGATTGGGCGACGCTGAAATCAGTCAAGATATTC
AAGTGGTGTCCAGTGGTTCATTAGGTCTTGATATCGCCTTAGGAGTTGGCGGTCTTGCACGTGGTCGAGTGATTGAAATC
TACGGCCCTGAATCATCAGGTAAAACAACTTTGACATTGCACGCTATTGCAGAAATGCAAAAGCTTGGCGGCACCTGCGC
CTTTATTGATGCAGAGCATGCTTTAGATGTTCAGTACGCATCACGTCTTGGTGTTGATGTAAATAATCTCTTGATCTCTC
AACCAGATACTGGCGAGCAAGCTTTGGAAATCGCTGATGCATTAGTGCGCTCAGGTTCGATTGATTTGATCGTTATTGAC
TCAGTGGCGGCCTTGGTTCCTAGGGCTGAAATTGAAGGCGATATGGGCGACTCCTTGCCTGGCCTGCAGGCACGCTTGAT
GAGTCAAGCCTTGCGTAAGTTAACGGGCGCTATCAAGCGTACAAACACCACCGTAATCTTCATTAATCAGATTCGTATGA
AGATTGGCGTGATGTTTGGCTCCCCAGAAACTACTACAGGCGGTAACGCACTGAAGTTCTATGCCTCTATGCGTTTAGAT
ATTCGCCGTATTGGCAGCATCAAAAAAGGTGACGAGGTTGTTGGTAATGAAACTCGCGTCAAGGTTGTGAAGAATAAAGT
TTCTCCTCCATTCCGCGAAGCTATTTTTGACATCATGTATGGCGCTGGTATTTCAAGAGAAGGTGAAATCATTGATATGG
GTGTTGAGGCCGATATTGTTGATAAGTCAGGTTCTTGGTATAGCTATAACGGTGATCGCATTGGTCAAGGCAAGGATAAC
GTGCGTGAGTTCTTAAAAGAGAATCCAGCAATTGCTAAAGATATTGAAGCTAAGATCCGCGAGAAACTGGGTGTGAAATC
TGGTTCGGCAGTAGTTACTGATGTATTGAGTGAAGAAGAGGAAGTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(23-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4SZY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

79.944

98.898

0.791
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae MS11

73.636

90.909

0.669
  recA Neisseria gonorrhoeae strain FA1090

73.636

90.909

0.669
  recA Acinetobacter baylyi ADP1

69.767

94.766

0.661
  recA Acinetobacter baumannii D1279779

69.767

94.766

0.661
  recA Pseudomonas stutzeri DSM 10701

69.027

93.388

0.645
  recA Vibrio cholerae O1 biovar El Tor strain E7946

67.147

95.592

0.642
  recA Vibrio cholerae strain A1552

67.147

95.592

0.642
  recA Glaesserella parasuis strain SC1401

68.882

91.185

0.628
  recA Bacillus subtilis subsp. subtilis str. 168

66.867

91.46

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.62

94.215

0.609
  recA Helicobacter pylori 26695

67.485

89.807

0.606
  recA Helicobacter pylori strain NCTC11637

67.178

89.807

0.603
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.257

91.185

0.595
  recA Latilactobacillus sakei subsp. sakei 23K

62.577

89.807

0.562
  recA Streptococcus pneumoniae D39

60.714

92.562

0.562
  recA Streptococcus pneumoniae Rx1

60.714

92.562

0.562
  recA Streptococcus pneumoniae R6

60.714

92.562

0.562
  recA Streptococcus pneumoniae TIGR4

60.714

92.562

0.562
  recA Streptococcus mutans UA159

58.841

95.041

0.559
  recA Streptococcus mitis NCTC 12261

58.333

95.868

0.559
  recA Streptococcus mitis SK321

60.06

91.736

0.551
  recA Lactococcus lactis subsp. cremoris KW2

58.929

92.562

0.545
  recA Streptococcus pyogenes NZ131

59.878

90.634

0.543
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

88.43

0.537

Multiple sequence alignment