Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C6571_RS08530 Genome accession   NZ_CP027669
Coordinates   1829075..1830205 (+) Length   376 a.a.
NCBI ID   WP_211300714.1    Uniprot ID   -
Organism   Simplicispira suum strain SC1-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1824075..1835205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6571_RS08500 (C6571_08500) - 1824295..1825137 (+) 843 WP_106446302.1 biotin--[acetyl-CoA-carboxylase] ligase -
  C6571_RS08505 (C6571_08505) - 1825145..1825867 (+) 723 WP_106446303.1 SPOR domain-containing protein -
  C6571_RS08510 (C6571_08510) - 1825892..1827337 (-) 1446 WP_106446304.1 sensor histidine kinase -
  C6571_RS08520 (C6571_08520) - 1827682..1828356 (-) 675 WP_106446306.1 response regulator transcription factor -
  C6571_RS08525 (C6571_08525) - 1828436..1828921 (-) 486 WP_106446307.1 MarR family winged helix-turn-helix transcriptional regulator -
  C6571_RS08530 (C6571_08530) recA 1829075..1830205 (+) 1131 WP_211300714.1 recombinase RecA Machinery gene
  C6571_RS08535 (C6571_08535) recX 1830254..1830700 (+) 447 WP_245901468.1 recombination regulator RecX -
  C6571_RS08540 (C6571_08540) argC 1830720..1831652 (-) 933 WP_106446309.1 N-acetyl-gamma-glutamyl-phosphate reductase -
  C6571_RS08545 (C6571_08545) sucC 1831805..1832965 (+) 1161 WP_106446310.1 ADP-forming succinate--CoA ligase subunit beta -
  C6571_RS08550 (C6571_08550) sucD 1832985..1833878 (+) 894 WP_106446311.1 succinate--CoA ligase subunit alpha -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 40257.16 Da        Isoelectric Point: 5.2049

>NTDB_id=278855 C6571_RS08530 WP_211300714.1 1829075..1830205(+) (recA) [Simplicispira suum strain SC1-8]
MSTPTNRSMPADGEKARALQAALAQIEKQFGKGTIMRLGEGEVIEDIQVVSTGSLGLDVALGVGGLPRGRVVEIYGPESS
GKTTLTLQVIAEMQKQGGQCAFVDAEHALDIQYAQKLGVNLQDLLISQPDTGEQALEIVDSLVRSGAVDLIVIDSVAALT
PKAEIEGDMGDSLPGLQARLMSQALRKLTSSIKKTNCMVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGS
IKRGEEVIGNETRVKVVKNKVSPPFKTAEFDILFGEGISRQGEIIDMGVVARIVEKSGAWYAYNGEKIGQGRDNAREFLR
ENPQLANEIENKVRESLGVAQLAADIRVLAAPVDDAADGVVPAPAAKGKKSEQKVD

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=278855 C6571_RS08530 WP_211300714.1 1829075..1830205(+) (recA) [Simplicispira suum strain SC1-8]
ATGAGCACCCCGACCAACCGCAGCATGCCTGCCGACGGCGAAAAAGCCCGTGCCCTGCAAGCCGCTCTCGCGCAAATCGA
GAAGCAGTTTGGCAAAGGCACCATCATGCGGCTCGGCGAAGGCGAAGTGATTGAAGACATTCAGGTGGTCTCCACTGGCT
CGCTGGGTCTGGATGTGGCGCTCGGCGTGGGCGGCCTGCCGCGCGGCCGGGTGGTGGAAATCTACGGTCCGGAAAGCTCG
GGCAAGACCACGCTGACGCTGCAGGTCATCGCCGAGATGCAAAAGCAGGGCGGCCAGTGCGCCTTTGTCGACGCCGAGCA
CGCGCTCGATATCCAGTACGCGCAAAAGCTCGGCGTGAACCTGCAGGACCTGCTGATCAGCCAGCCCGACACCGGCGAGC
AGGCGCTGGAAATTGTCGACAGCCTGGTGCGCTCGGGCGCGGTGGACCTGATCGTCATCGACTCGGTTGCCGCCCTCACG
CCCAAGGCCGAGATTGAGGGTGACATGGGCGACAGCCTTCCGGGCCTGCAGGCGCGCCTCATGAGCCAGGCGCTGCGCAA
GCTCACGTCGAGCATCAAGAAGACCAATTGCATGGTCATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCG
GTTCGCCCGAAACCACCACGGGTGGCAATGCGCTCAAGTTTTACGCCTCGGTGCGGCTCGATATCCGCCGCATCGGCTCA
ATCAAGCGGGGCGAGGAAGTCATTGGCAACGAAACCCGTGTCAAGGTGGTGAAAAACAAGGTTTCACCGCCGTTCAAAAC
CGCCGAATTCGACATTTTGTTTGGCGAAGGCATTTCGCGCCAGGGCGAGATCATCGACATGGGTGTAGTGGCGCGCATTG
TGGAAAAGTCGGGTGCCTGGTATGCCTACAACGGCGAGAAAATCGGCCAGGGCCGCGACAACGCCCGCGAGTTTTTGCGC
GAAAACCCGCAGCTGGCCAACGAGATTGAAAACAAGGTGCGCGAGAGCCTGGGGGTGGCGCAACTGGCTGCCGACATTCG
GGTGCTGGCCGCACCTGTCGATGACGCCGCCGACGGTGTGGTGCCTGCGCCCGCAGCCAAGGGCAAGAAATCCGAGCAAA
AAGTGGACTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(17-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

80.059

90.691

0.726
  recA Pseudomonas stutzeri DSM 10701

70.115

92.553

0.649
  recA Neisseria gonorrhoeae MS11

72.699

86.702

0.63
  recA Neisseria gonorrhoeae MS11

72.699

86.702

0.63
  recA Neisseria gonorrhoeae strain FA1090

72.699

86.702

0.63
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.667

93.351

0.622
  recA Vibrio cholerae strain A1552

66.667

93.351

0.622
  recA Glaesserella parasuis strain SC1401

67.536

91.755

0.62
  recA Acinetobacter baylyi ADP1

71.166

86.702

0.617
  recA Acinetobacter baumannii D1279779

70.552

86.702

0.612
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.568

89.894

0.598
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.173

87.5

0.588
  recA Helicobacter pylori 26695

65.559

88.032

0.577
  recA Helicobacter pylori strain NCTC11637

65.257

88.032

0.574
  recA Bacillus subtilis subsp. subtilis str. 168

65.337

86.702

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

61.747

88.298

0.545
  recA Streptococcus mutans UA159

60.909

87.766

0.535
  recA Lactococcus lactis subsp. cremoris KW2

60.606

87.766

0.532
  recA Streptococcus pyogenes NZ131

60.79

87.5

0.532
  recA Streptococcus pneumoniae D39

59.697

87.766

0.524
  recA Streptococcus pneumoniae Rx1

59.697

87.766

0.524
  recA Streptococcus pneumoniae R6

59.697

87.766

0.524
  recA Streptococcus pneumoniae TIGR4

59.697

87.766

0.524
  recA Streptococcus mitis NCTC 12261

59.394

87.766

0.521
  recA Streptococcus mitis SK321

59.394

87.766

0.521
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.451

87.234

0.519

Multiple sequence alignment