Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C4901_RS11340 Genome accession   NZ_CP027663
Coordinates   2253158..2254201 (-) Length   347 a.a.
NCBI ID   WP_110137419.1    Uniprot ID   A0A2Z3R4J0
Organism   Acidiferrobacter sp. SPIII_3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2248158..2259201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C4901_RS11320 (C4901_11275) csrA 2248453..2248656 (-) 204 WP_065970271.1 carbon storage regulator CsrA -
  C4901_RS11325 (C4901_11280) - 2248788..2250029 (-) 1242 WP_110137416.1 aspartate kinase -
  C4901_RS11330 (C4901_11285) alaS 2250104..2252683 (-) 2580 WP_110137417.1 alanine--tRNA ligase -
  C4901_RS11335 (C4901_11290) - 2252709..2253161 (-) 453 WP_110137418.1 regulatory protein RecX -
  C4901_RS11340 (C4901_11295) recA 2253158..2254201 (-) 1044 WP_110137419.1 recombinase RecA Machinery gene
  C4901_RS11345 (C4901_11300) - 2254261..2254749 (-) 489 WP_205735964.1 CinA family protein -
  C4901_RS11350 (C4901_11305) - 2254746..2255210 (-) 465 WP_240611761.1 phosphatidylglycerophosphatase A -
  C4901_RS11355 (C4901_11310) thiL 2255191..2256162 (-) 972 WP_110137422.1 thiamine-phosphate kinase -
  C4901_RS11360 (C4901_11315) nusB 2256163..2256588 (-) 426 WP_110137423.1 transcription antitermination factor NusB -
  C4901_RS11365 (C4901_11320) ribE 2256585..2257064 (-) 480 WP_110137424.1 6,7-dimethyl-8-ribityllumazine synthase -
  C4901_RS11370 (C4901_11325) ribBA 2257057..2258169 (-) 1113 WP_110137425.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 36662.74 Da        Isoelectric Point: 5.5267

>NTDB_id=278754 C4901_RS11340 WP_110137419.1 2253158..2254201(-) (recA) [Acidiferrobacter sp. SPIII_3]
MDVNKGKALSAALGQIEKQFGKGSVMRLGDAGEAPAVAAVPTGSLGLDMALGIGGLPRGRVVEIYGPESSGKTTLTLHVV
AQAQKAGGTAAFIDAEHALDPTYAKRLGVNVDDLLVSQPDSGEQALEITDMLVRSGGVDVVVVDSVAALTPKAEIEGEMG
DSHVGLQARLMSQALRKLTGNIKRSNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKRGEEVVGS
QTRVKVVKNKIAPPFRQCEFDILYDQGISKEGELIELGVASNLVEKSGAWYSYGGERIGQGKDNARQYLRDNPALADELE
AKLRASFTTKPAGGPGDGLAPDDGDDM

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=278754 C4901_RS11340 WP_110137419.1 2253158..2254201(-) (recA) [Acidiferrobacter sp. SPIII_3]
ATGGATGTCAACAAGGGCAAGGCCTTGAGCGCGGCTCTTGGTCAGATCGAAAAGCAGTTCGGGAAGGGGTCGGTCATGCG
GCTCGGCGATGCCGGTGAGGCACCGGCGGTCGCGGCCGTGCCTACCGGATCGCTGGGGCTCGATATGGCGCTCGGCATCG
GCGGCCTGCCGCGCGGCCGGGTGGTCGAGATCTACGGCCCGGAGTCTTCGGGCAAGACCACCTTGACCCTGCATGTCGTG
GCCCAGGCCCAAAAGGCCGGGGGTACGGCGGCGTTCATCGATGCCGAGCACGCCCTCGACCCGACCTATGCCAAGCGCCT
GGGGGTGAATGTCGACGATCTGCTGGTGTCGCAACCGGATTCGGGCGAGCAGGCGCTGGAGATCACCGACATGCTGGTGC
GCTCGGGCGGTGTGGATGTGGTGGTCGTCGACTCGGTGGCGGCGCTGACGCCCAAGGCCGAGATCGAAGGCGAGATGGGC
GACTCGCATGTCGGTCTGCAGGCACGGCTCATGTCGCAGGCCCTGCGCAAACTCACGGGCAATATCAAGCGCTCGAACAC
GCTCGTGATCTTCATCAACCAGATCCGCATGAAGATCGGGGTGATGTTCGGCAACCCCGAGACCACGACCGGGGGTAATG
CCCTCAAGTTCTACGCCTCGGTACGCCTCGACATCCGCCGCATCGGCACCATAAAGCGTGGCGAAGAGGTGGTGGGCAGC
CAGACGCGCGTCAAGGTCGTGAAGAACAAGATCGCCCCGCCGTTCCGGCAATGCGAGTTCGATATCCTCTATGACCAGGG
GATATCGAAGGAGGGGGAGCTGATCGAGTTGGGGGTGGCCTCGAATCTGGTGGAGAAGTCCGGGGCCTGGTATTCGTATG
GGGGTGAGCGCATAGGCCAGGGCAAGGACAACGCCCGCCAGTACCTGCGCGACAACCCGGCCTTGGCCGATGAGCTGGAG
GCGAAGCTCCGGGCATCGTTCACGACCAAGCCCGCGGGAGGTCCCGGCGACGGCCTGGCGCCCGATGATGGGGATGATAT
GTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z3R4J0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

72.754

99.424

0.723
  recA Acinetobacter baylyi ADP1

72.892

95.677

0.697
  recA Vibrio cholerae strain A1552

74.383

93.372

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.383

93.372

0.695
  recA Ralstonia pseudosolanacearum GMI1000

75.786

91.643

0.695
  recA Acinetobacter baumannii D1279779

70.958

96.254

0.683
  recA Neisseria gonorrhoeae MS11

71.692

93.66

0.671
  recA Neisseria gonorrhoeae MS11

71.692

93.66

0.671
  recA Neisseria gonorrhoeae strain FA1090

71.692

93.66

0.671
  recA Glaesserella parasuis strain SC1401

70.948

94.236

0.669
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.549

94.524

0.62
  recA Helicobacter pylori strain NCTC11637

64.329

94.524

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.253

95.677

0.605
  recA Helicobacter pylori 26695

64.024

94.524

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

65.312

92.219

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

64.688

92.219

0.597
  recA Streptococcus mitis NCTC 12261

62.154

93.66

0.582
  recA Streptococcus pyogenes NZ131

61.846

93.66

0.579
  recA Streptococcus pneumoniae R6

61.846

93.66

0.579
  recA Streptococcus pneumoniae TIGR4

61.846

93.66

0.579
  recA Streptococcus mitis SK321

61.846

93.66

0.579
  recA Streptococcus pneumoniae Rx1

61.846

93.66

0.579
  recA Streptococcus pneumoniae D39

61.846

93.66

0.579
  recA Streptococcus mutans UA159

60.856

94.236

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.923

93.66

0.571
  recA Lactococcus lactis subsp. cremoris KW2

60.185

93.372

0.562

Multiple sequence alignment