Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C7A04_RS05940 Genome accession   NZ_CP027586
Coordinates   1082542..1083603 (-) Length   353 a.a.
NCBI ID   WP_062863587.1    Uniprot ID   -
Organism   Escherichia coli strain 2012EL-2448     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1077542..1088603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7A04_RS05925 csrA 1078621..1078806 (-) 186 WP_000906486.1 carbon storage regulator CsrA -
  C7A04_RS05930 alaS 1079041..1081671 (-) 2631 WP_000047176.1 alanine--tRNA ligase -
  C7A04_RS05935 recX 1081799..1082299 (-) 501 WP_000140506.1 recombination regulator RecX -
  C7A04_RS05940 recA 1082542..1083603 (-) 1062 WP_062863587.1 recombinase RecA Machinery gene
  C7A04_RS05945 pncC 1083683..1084180 (-) 498 WP_000132235.1 nicotinamide-nucleotide amidase -
  C7A04_RS05950 mltB 1084325..1085410 (-) 1086 WP_001299653.1 lytic murein transglycosylase B -
  C7A04_RS05955 srlA 1085666..1086229 (+) 564 WP_000573321.1 PTS glucitol/sorbitol transporter subunit IIC -
  C7A04_RS05960 srlE 1086226..1087185 (+) 960 WP_000148875.1 PTS glucitol/sorbitol transporter subunit IIB -
  C7A04_RS05965 srlB 1087196..1087567 (+) 372 WP_000216201.1 PTS glucitol/sorbitol transporter subunit IIA -
  C7A04_RS05970 srlD 1087571..1088350 (+) 780 WP_001077342.1 sorbitol-6-phosphate dehydrogenase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37963.34 Da        Isoelectric Point: 4.8171

>NTDB_id=278331 C7A04_RS05940 WP_062863587.1 1082542..1083603(-) (recA) [Escherichia coli strain 2012EL-2448]
MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQV
IAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEGENVVG
SETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELVDLGVKEKLIEKAGAWYSYKGEKIGQGKANATAWLKDNSETAKEI
EKKVRELLLSNPNSTPDFSVDDSEGVAETNEDF

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=278331 C7A04_RS05940 WP_062863587.1 1082542..1083603(-) (recA) [Escherichia coli strain 2012EL-2448]
ATGGCTATCGACGAAAACAAACAGAAAGCGTTGGCGGCAGCACTGGGCCAGATTGAGAAACAATTTGGTAAAGGCTCCAT
CATGCGCCTGGGTGAAGACCGTTCCATGGATGTGGAAACCATCTCTACCGGTTCGCTTTCACTGGATATCGCGCTTGGGG
CAGGTGGTCTACCGATGGGCCGTATCGTCGAAATCTACGGACCGGAATCTTCCGGTAAAACCACGCTGACGTTGCAGGTG
ATCGCCGCAGCGCAGCGTGAAGGTAAAACCTGTGCGTTTATCGATGCTGAACACGCGCTGGACCCAATCTACGCACGTAA
ACTGGGCGTCGATATCGATAACCTGCTGTGCTCCCAGCCGGACACCGGCGAGCAGGCACTGGAAATCTGTGACGCCCTGG
CGCGTTCTGGCGCAGTAGACGTTATCGTCGTTGACTCCGTGGCGGCACTGACGCCGAAAGCGGAAATCGAAGGCGAAATC
GGCGACTCTCACATGGGCCTTGCGGCACGGATGATGAGCCAGGCGATGCGTAAGCTGGCGGGTAACCTGAAGCAGTCCAA
CACGCTGCTGATCTTCATCAACCAGATCCGTATGAAAATTGGTGTGATGTTCGGTAACCCGGAAACCACTACCGGTGGTA
ACGCGCTGAAATTCTACGCCTCTGTTCGTCTCGACATCCGTCGTATCGGCGCGGTGAAAGAGGGCGAAAACGTGGTGGGT
AGCGAAACCCGCGTGAAAGTGGTGAAGAACAAAATCGCTGCACCGTTTAAACAGGCTGAATTTCAGATCCTCTACGGCGA
AGGTATCAACTTCTACGGCGAACTGGTTGACCTGGGCGTAAAAGAGAAGCTGATCGAGAAAGCAGGCGCGTGGTACAGCT
ACAAAGGTGAGAAGATCGGTCAGGGTAAAGCGAATGCAACTGCCTGGCTGAAAGATAACTCGGAAACCGCGAAAGAGATC
GAGAAGAAAGTACGTGAGTTGCTGCTGAGCAACCCGAACTCAACGCCGGATTTCTCTGTAGATGACAGCGAAGGCGTAGC
AGAAACTAACGAAGATTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

83.988

93.768

0.788
  recA Vibrio cholerae strain A1552

83.988

93.768

0.788
  recA Pseudomonas stutzeri DSM 10701

73.887

95.467

0.705
  recA Acinetobacter baumannii D1279779

74.085

92.918

0.688
  recA Acinetobacter baylyi ADP1

73.476

92.918

0.683
  recA Glaesserella parasuis strain SC1401

69.164

98.3

0.68
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae MS11

68.712

92.351

0.635
  recA Neisseria gonorrhoeae strain FA1090

68.712

92.351

0.635
  recA Ralstonia pseudosolanacearum GMI1000

70.159

89.235

0.626
  recA Streptococcus mitis SK321

60

99.15

0.595
  recA Streptococcus mitis NCTC 12261

60

99.15

0.595
  recA Helicobacter pylori strain NCTC11637

61.721

95.467

0.589
  recA Helicobacter pylori 26695

61.424

95.467

0.586
  recA Streptococcus pneumoniae TIGR4

63.158

91.501

0.578
  recA Streptococcus pneumoniae Rx1

63.158

91.501

0.578
  recA Streptococcus pneumoniae D39

63.158

91.501

0.578
  recA Streptococcus pneumoniae R6

63.158

91.501

0.578
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.346

91.785

0.572
  recA Streptococcus mutans UA159

61.846

92.068

0.569
  recA Streptococcus pyogenes NZ131

61.846

92.068

0.569
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

94.334

0.569
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

90.935

0.567
  recA Latilactobacillus sakei subsp. sakei 23K

61.538

92.068

0.567
  recA Lactococcus lactis subsp. cremoris KW2

61.61

91.501

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.748

90.935

0.552

Multiple sequence alignment